Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme15401g00001 GTAGGGAACTTCATGCACTACATAAGTCGATTCATAGCTGGATTTACAATTGGTTTCGTGAGAGTGTGGCAGATTAGTTTAGTCACACTTTCAATTGTTCCATTGATTGCCCTTGCTGGAGGTCTTTATGCATATGTCACTATTGGCCTCATTGCAAAAATTAGAAAAGAATATGTCAAGGCTGGTGAAATTGCTGAAGAGGACCGGAGGGAGTAA 216 0.4074 VGNFMHYISRFIAGFTIGFVRVWQISLVTLSIVPLIALAGGLYAYVTIGLIAKIRKEYVKAGEIAEEDRRE 71
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme15401g00001 71 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 71 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme15401g00001 71 Pfam ABC transporter transmembrane region 3 68 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme15401g00001 71 SUPERFAMILY ABC transporter transmembrane region 3 67 IPR036640 GO:0005524|GO:0016020
Trme15401g00001 71 PANTHER ABC TRANSPORTER B FAMILY 1 67 IPR039421 -
Trme15401g00001 71 Gene3D ABC transporter type 1, transmembrane domain 1 68 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme15401g00001 Trme-Chr15401 677 1085 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme15401g00001 1 67 Calmodulin-binding Proteins AT2G36910 44.776 7.88e-17 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme15401g00001 K05658 - gmx:100819045 126.716