Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme15398g00001 ATGGCTGGCATAGCATTTGGACGCTTCGATGATTCTTTCAGTGTGAGCTCTATTAAGGCCTATGTTGCCGAGTTCATCTCAACCTTGATCTTTGTTTTTGCCGGTGTTGGTTCAGCCATAGCCTATGCCAACATTTCTGGTGGCCATGTCAACCCTGCTGTGACTTTTGGGTTGGCTATTGGAGGACAGATCACAATCCTCACTGGTATCTTCTACTGGATTGCACAGCTTCTTGGTTCCATAGT 245 0.4653 MAGIAFGRFDDSFSVSSIKAYVAEFISTLIFVFAGVGSAIAYANISGGHVNPAVTFGLAIGGQITILTGIFYWIAQLLGSIV 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme15398g00001 82 PANTHER AQUAPORIN-8 41 82 IPR034294 -
Trme15398g00001 82 Gene3D Glycerol uptake facilitator protein. 2 82 IPR023271 -
Trme15398g00001 82 SUPERFAMILY Aquaporin-like 13 82 IPR023271 -
Trme15398g00001 82 ProSitePatterns MIP family signature. 49 57 IPR022357 -
Trme15398g00001 82 Pfam Major intrinsic protein 42 82 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trme15398g00001 82 PRINTS Major intrinsic protein family signature 68 82 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trme15398g00001 82 PRINTS Major intrinsic protein family signature 31 55 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme15398g00001 Trme-Chr15398 1003 1492 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme15398g00001 1 80 Major Intrinsic Protein MIP AT3G16240 60.714 1.49e-38 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme15398g00001 K09873 - sspl:121795139 139.813