Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme153899g00001 CAGGTACTTCTTTCAGCAGCTGATCTCAGGTGTCCATTTCTGTCATACCATGGTAGATTCGTGTTCATGTTCGAGCAAATATGCCACAGAGATCTGAAGCTAGAAAATACCCTTTTAGATGGAAGTCCTGCACCCCGCTTAAAAATCTGTGACTTTGGTTATTCAAAGTCATCTTTGCTCCATTCACGGCCCAAATCAACTGTTGGAACACCGGCGTATATAGCACCAGAGGTTCTTTCTAGGCGGGAGTATGATGGAAAGGTAATATATTCACCCCACACATTGGATTGA 291 0.4364 QVLLSAADLRCPFLSYHGRFVFMFEQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKVIYSPHTLD 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme153899g00001 96 ProSiteProfiles Protein kinase domain profile. 1 96 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme153899g00001 96 ProSitePatterns Serine/Threonine protein kinases active-site signature. 27 39 IPR008271 GO:0004672|GO:0006468
Trme153899g00001 96 PANTHER SERINE/THREONINE KINASE 26 87 - -
Trme153899g00001 96 Gene3D Transferase(Phosphotransferase) domain 1 12 91 - -
Trme153899g00001 96 SUPERFAMILY Protein kinase-like (PK-like) 26 88 IPR011009 -
Trme153899g00001 96 Pfam Protein kinase domain 25 88 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme153899g00001 Trme-Chr153899 73 516 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme153899g00001 27 86 CBL-interacting serine-threonine protein kinases AT5G01810 53.731 8.44e-14 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Trme153899g00001 Pkinase 1.5e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme153899g00001 K14498 - qsu:112008910 134.035