Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme153744g00001 ATGGTGAAGGCGGGATTTGCTGGTGATGATGCTCCCAGGGCTGTGTTTCCAAGTATTGTTGGCCGACCACGTCATACCGGTGTTATGGTTGGGATGGGTCAAAAGGATGCCTATGTTGGTGATGAAGCCCAATCAAAAAGAGGTATTCTTACTCTCAAGTACCCCATTGAGCATGGTATAGTCAGTAACTGGGATGACATGGAAAAGATCTGGCATCACACATTTTACAATGAATTGCGTGTTGCTCCTGAGGAGCACCCAGTGCTTCTAACTGAGGCTCCACTCAACCCAAAGGCCAACAGAGAAAAGATGACCCAAATCATGTTCGAGACCTTTAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTCCTCTCCCTCTATGC 386 0.4819 MVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYA 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme153744g00001 129 ProSitePatterns Actins and actin-related proteins signature. 89 101 IPR020902 -
Trme153744g00001 129 Gene3D Actin; Chain A, domain 2 17 57 - -
Trme153744g00001 129 Pfam Actin 2 129 IPR004000 -
Trme153744g00001 129 SUPERFAMILY Actin-like ATPase domain 2 129 IPR043129 -
Trme153744g00001 129 Gene3D - 1 129 - -
Trme153744g00001 129 CDD NBD_sugar-kinase_HSP70_actin 59 129 - -
Trme153744g00001 129 FunFam Actin, alpha skeletal muscle 1 128 - -
Trme153744g00001 129 ProSitePatterns Actins signature 1. 38 48 IPR004001 -
Trme153744g00001 129 PRINTS Actin signature 100 113 IPR004000 -
Trme153744g00001 129 PRINTS Actin signature 125 129 IPR004000 -
Trme153744g00001 129 PRINTS Actin signature 34 45 IPR004000 -
Trme153744g00001 129 PRINTS Actin signature 11 20 IPR004000 -
Trme153744g00001 129 PRINTS Actin signature 46 68 IPR004000 -
Trme153744g00001 129 PANTHER ACTIN 5 129 IPR004000 -
Trme153744g00001 129 FunFam Actin, alpha skeletal muscle 19 56 - -
Trme153744g00001 129 SMART actin_3 1 129 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme153744g00001 Trme-Chr153744 1 490 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme153744g00001 1 129 Cytoskeleton Gene Families AT5G09810 100.000 4.40e-94 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme153744g00001 K10355 - peq:110035365 266.929