Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme153667g00001 GGGAAGAACGCCATTGGTGGAAGAAACGGTAAAATCTACATTGTAAATGATGCCAATGATGACAATCCGGTGAACCCAAAGCCGGGAACACTCCGTCACGCCGTGATCCAAGTTGAACCATTATGGATAATCTTTGCTAGAGACATGGTGATCAAGTTAAAAGAAGAATTAATCATGAATTCTTTCAAAACAATTGACGGTAGAGGCGCAAGTGTGCACATTGCTGGTGGGACTCCCCGCGACATTTCGGGTGGAGGACTATATCGGACGGTGATGGTGTGTCCATTTTTGGTGGAAGTCATGTTTGGGTTGATCATTGTTCTTTGTCTAATTGTAAAGATGGTTTGA 348 0.4368 GKNAIGGRNGKIYIVNDANDDNPVNPKPGTLRHAVIQVEPLWIIFARDMVIKLKEELIMNSFKTIDGRGASVHIAGGTPRDISGGGLYRTVMVCPFLVEVMFGLIIVLCLIVKMV 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme153667g00001 115 Gene3D - 1 86 IPR012334 -
Trme153667g00001 115 PRINTS Pollen allergen Amb family signature 20 45 IPR018082 -
Trme153667g00001 115 PRINTS Pollen allergen Amb family signature 56 72 IPR018082 -
Trme153667g00001 115 PANTHER PECTATE LYASE 18-RELATED 1 77 IPR045032 GO:0030570
Trme153667g00001 115 SUPERFAMILY Pectin lyase-like 1 78 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme153667g00001 Trme-Chr153667 3 441 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme153667g00001 1 77 Polysaccharide Lyase AT4G24780 81.818 1.31e-43 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme153667g00001 K01728 - pop:7458080 137.887