Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme153602g00001 ATGGAGAACAACAACAGCCACAACCAACAACAATATCCAACGCCACAACCCACGGCGGTTACATCTGCAGCACCATTCCAACACCTTCTCCAACAACAACAACAACAGCTTCAAATGTTCTGGTCATACCAAAGACAAGAAATCGAACACGTTAATGACTTCAAAAACCACCAACTTCCATTAGCACGCATTAAGAAAATCATGAAAGCCGATGAAGATGTTCGTATGATCTCTGCTGAAGCACCTATCCTTTTCGCCAAAGCATGTGAACTTTTCATTCTCGAACTCACTATTCGTTCATGGCTTCATGCTGAAGAAAATAAACGAAGAACATTGCAGAAAAATGACATTGCTGCTGCTATTACTCGTACTGATATTTTTGATTTTTTGGTTGATATTGTTCCGAGAGATGAGATTAAAGAAGAAGGTA 430 0.3977 MENNNSHNQQQYPTPQPTAVTSAAPFQHLLQQQQQQLQMFWSYQRQEIEHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKEEG 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme153602g00001 143 SUPERFAMILY Histone-fold 6 130 IPR009072 GO:0046982
Trme153602g00001 143 MobiDBLite consensus disorder prediction 1 20 - -
Trme153602g00001 143 FunFam Nuclear transcription factor Y subunit gamma 27 136 - -
Trme153602g00001 143 Pfam Core histone H2A/H2B/H3/H4 4 121 IPR007125 GO:0003677
Trme153602g00001 143 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 31 138 - -
Trme153602g00001 143 Gene3D Histone, subunit A 22 136 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme153602g00001 Trme-Chr153602 1 430 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme153602g00001 13 142 CCAAT-HAP5 Transcription Factor Family AT5G63470 87.218 6.79e-74 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Trme153602g00001 Histone 3.9e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme153602g00001 - - pvy:116106882 233.802