Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme153565g00001 AGAGAGGTAGGTCGTGGTGGTTCTGCCGGGAACAAGTTTCGTATGTCATTGGTTCTTCCGGTGGTGGTGATGATGAATTGCGCAGACAATATTGGAGCCAATAATCTCCACATCATCTTCGTCAAGGGAATTGAGGGTAAAGTTAACCGCATTCCTTCAACTTGCGTTGTTGATATGGTGATGGCCACTATCAAGAAGGGAAAACCCGGTCTCAACGAACAGGTTTTACCTGCTGTCATCGTAAACCATGGTGCCGAAAGGATGGTGTCTTCATGTACTTCGAAGATAATGTTGGTGTTATTGTGA 306 0.4542 REVGRGGSAGNKFRMSLVLPVVVMMNCADNIGANNLHIIFVKGIEGKVNRIPSTCVVDMVMATIKKGKPGLNEQVLPAVIVNHGAERMVSSCTSKIMLVLL 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme153565g00001 101 Gene3D Ribosomal protein L14 1 96 IPR036853 GO:0003735|GO:0005840|GO:0006412
Trme153565g00001 101 SMART Ribosomal_L14_2 18 97 IPR000218 GO:0003735|GO:0005840|GO:0006412
Trme153565g00001 101 Pfam Ribosomal protein L14p/L23e 23 83 IPR000218 GO:0003735|GO:0005840|GO:0006412
Trme153565g00001 101 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 19 86 IPR000218 GO:0003735|GO:0005840|GO:0006412
Trme153565g00001 101 SUPERFAMILY Ribosomal protein L14 10 86 IPR036853 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme153565g00001 Trme-Chr153565 2 307 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme153565g00001 4 83 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 70.000 7.56e-37 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme153565g00001 K02894 - cave:132171032 120.553