Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme15334g00001 ATGGAGGACTTTCACGTTGCGAAAATCGTCCAGTTCAACGGCCGAGAGTTGGGACTTTTTGCTATATTTGATGGACACTTGGGTGACACTGTGCCTGCCTATTTACAAAAACATCTCTTTTCTAATATCTTGAAGGAAGAGAACTTTTGGACTGATCCAAACAGTTCGATCATCGAAGCTTATGAGGCAACAGATCATGAAATTCTATCTCACAGTCCTGATTTGGGGCGAGGAGGATCGACTGCAGTGACTGCCATTCTTATAAATAATCAGAAGTTATGGATAGCAAATGTTGGAGATTCACGGGCTGTTCTTTCGAGGAAAGGCGTCGCTATACAGATGAGTATTGATCATGAGCCTAATACTGAAAGACGCATCATCGAGAATAAAGGAGGCTTTGTCTCGAACCTTCCAG 415 0.4289 MEDFHVAKIVQFNGRELGLFAIFDGHLGDTVPAYLQKHLFSNILKEENFWTDPNSSIIEAYEATDHEILSHSPDLGRGGSTAVTAILINNQKLWIANVGDSRAVLSRKGVAIQMSIDHEPNTERRIIENKGGFVSNLP 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme15334g00001 138 SMART PP2C_4 1 137 IPR001932 -
Trme15334g00001 138 Pfam Protein phosphatase 2C 16 136 IPR001932 -
Trme15334g00001 138 ProSiteProfiles PPM-type phosphatase domain profile. 1 138 IPR001932 -
Trme15334g00001 138 Gene3D - 1 137 IPR036457 -
Trme15334g00001 138 PANTHER PROTEIN PHOSPHATASE 1 136 IPR015655 GO:0004722|GO:0006470
Trme15334g00001 138 CDD PP2Cc 1 136 IPR001932 -
Trme15334g00001 138 SUPERFAMILY PP2C-like 1 135 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme15334g00001 Trme-Chr15334 406 1173 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme15334g00001 1 138 PP2C-type Phosphatase Gene Family AT1G34750 75.362 4.03e-74 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme15334g00001 K17506 - gmx:102667117 241.121