Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme153330g00001 ACTTGTATAGAAGAGTTGTACCATGTTCTTCACCAATATCACTATCACCACCAGCTTCAGCACCACCAAGAACAGAATCATCATCACAAGGCCGGTGGGTTAATTTACCTTCTTCGTGCGAGAGGTCCGAGGAAAATGCAGTGTACAATGCTCTTAATTCCTATATCATCGGTCAAAGAAGGAGGAACTGCGCCGACTCCTTTGAAATTCACCAGTTACCATAATGAGCATGAATCTTCAAAAGGAAAGAAGCCGGAAGTTGTTGAATTTGGCTCAACTTGCACCGATTTTGAAAGAGAACCACTGATTTTGAATAGCAAAGCTCCTAGATGGCATGAACAGCTGCTATGTTGGTGCTTATATTTTAGGGGACGGGTTACGGTGGCTTCGGTGAAGAATTTTCAGCATGTAGCAGCCGAAGACCCTTGGGAAGAGAAAGTTATACTACAATTTGGAAAAATTGGGGATGACACATTGGTATCCTCTCTCCGCTTTTCAAGCCTTTGCAATATGTTTGAGTAG 522 0.4291 TCIEELYHVLHQYHYHHQLQHHQEQNHHHKAGGLIYLLRARGPRKMQCTMLLIPISSVKEGGTAPTPLKFTSYHNEHESSKGKKPEVVEFGSTCTDFEREPLILNSKAPRWHEQLLCWCLYFRGRVTVASVKNFQHVAAEDPWEEKVILQFGKIGDDTLVSSLRFSSLCNMFE 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme153330g00001 173 PANTHER TUBBY-RELATED 35 159 - -
Trme153330g00001 173 Gene3D Tubby Protein; Chain A 3 166 IPR025659 -
Trme153330g00001 173 PRINTS Tubby superfamily signature 25 52 IPR000007 -
Trme153330g00001 173 PRINTS Tubby superfamily signature 104 121 IPR000007 -
Trme153330g00001 173 PRINTS Tubby superfamily signature 122 138 IPR000007 -
Trme153330g00001 173 PRINTS Tubby superfamily signature 144 163 IPR000007 -
Trme153330g00001 173 SUPERFAMILY Tubby C-terminal domain-like 36 158 IPR025659 -
Trme153330g00001 173 ProSitePatterns Tub family signature 1. 122 135 IPR018066 -
Trme153330g00001 173 Coils Coil 169 173 - -
Trme153330g00001 173 Pfam Tub family 35 158 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme153330g00001 Trme-Chr153330 3 524 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme153330g00001 35 165 TUB Transcription Factor Family AT1G47270 51.389 3.20e-37 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Trme153330g00001 Tub 6.5e-31 CL0395