Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme15291g00001 ATGGTTGGAGATGGAATAAACGACTCACCGGCACTAGTGGCAGCTGATGTTGGAATGGCAATAGGTGCTGGCACAGACATAGCTATTGAAGCAGCTGACATTGTTCTCATGAAGAGTAACTTGGAGGATATAATAACAGCCATTGACCTTGCAAAGAAAACTTTCATCCGTATACGTCTAAATTACATTTGGGCTCTTGGATACAATCTTCTAGCAATTCCTGTTGCTGCTGGCATCCTTTATCCGTCTACTAAATTTCGGTTACCACCTTGGGTTGCTGGAGCTGCAATGGCCGCATCTTCTATTAGCGTTGTTTGCTCCTCACTCTTGTTAAAGAAATATAAGAGACCAACTAAGCTTAACAACTTGGAGATGAATGATATTCAGATTGAATGA 396 0.4167 MVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDIITAIDLAKKTFIRIRLNYIWALGYNLLAIPVAAGILYPSTKFRLPPWVAGAAMAASSISVVCSSLLLKKYKRPTKLNNLEMNDIQIE 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme15291g00001 131 PRINTS P-type cation-transporting ATPase superfamily signature 2 21 - -
Trme15291g00001 131 PRINTS P-type cation-transporting ATPase superfamily signature 25 37 - -
Trme15291g00001 131 SUPERFAMILY HAD-like 1 108 IPR036412 -
Trme15291g00001 131 Gene3D - 1 69 IPR023214 -
Trme15291g00001 131 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 1 128 - -
Trme15291g00001 131 NCBIfam HAD-IC family P-type ATPase 1 81 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme15291g00001 131 PRINTS H+-transporting ATPase (proton pump) signature 33 58 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme15291g00001 131 PRINTS H+-transporting ATPase (proton pump) signature 2 18 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme15291g00001 Trme-Chr15291 32 427 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme15291g00001 1 131 Primary Pumps ATPases AT1G63440 82.443 5.93e-74 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme15291g00001 K17686 - gmx:100817431 210.69