Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme15288g00001 AAATCGACTCTAACAGACTCTCTAGTTGCTGCTGCGGGGATTATTGCTCAGGAAGTTGCAGGTGATGTCCGTATGACGGACACCCGTGCTGATGAAGCTGAGCGTGGTATTACAATCAAGTCTACCGGTATCTCACTCTACTATGAAATGACTGATGAGTCTCTCAAGAGTTACAAGGGGGAGCGCAATGGAAATGAGTATCTCATTAATCTCATTGATTCTCCTGGGCACGTCGACTTCTCATCAGAGGTTACTGCTGCACTCCGTATTACTGATGGAGCACTTGTGGTGGTTGACTGTGTGGAAGGTGTATGTGTCCAAACTGAAACTGTGCTGCGACAAGCCCTTGGAGAAAGGATCAGGCCTGTTCTTACAGTTAACAAGATGGACAGATGCTTCCTTGAGCTCCAGGTTGATGGAGAGGAGGCATACCAGACCTTTCAAAGGGTTATTGAGAATGCTAATGTGATTATGGCTACATATGAAGATCCACTTCTTGGTGACGTTCAGGTGTATCCAGAGAAAGGAACCGTTGCTTTTTCTGCTGGTTTGCATGGTTGGGCCTTTACTCTGACAAACTTTGCAAAAATGTATGCCTCAAAATTTGGTGTTGATGAGACCAAGATGATGGAGAGGCTCTGGGGTGAAAATTTCTTTGATCCAGCCACTAAAAAATGGACCACCAAGAATACTGGTTCACCTTCTTGCAAACGTGGGTTTGTTCAGTTCTGTTATGAGCCTATCAAGCAGATCATTAACACTTGTATGAATGATCAGAAGGATAAGTTGTGGCCTATGCTGAAAAAGCTAAATGTCACCATGAAGTCCGATGAGAAGGAACTGTTGGGTAAGCCATTGATGAAACGTGTCATGCAGACCTGGCTTCCAGCAAGTAGTGCACTCCTAGAAATGATGATCTTCCATCTTCCCTCACCATCAACGGCCCAGAGGTATCGTGTTGAGAATTTGTACGAGGGTCCCCTTGATGATCAATATGCAAATGCTATCCGAAACTGTGATCCTGAAGGACCTTTGATGCTTTATGTCTCAAAGATGATTCCAGCATCTGATAAAGGAAGGTTTTTTGCTTTTGGCCGTGTATTTGCTGGTAAGGTTTCAACAGGTTTGAAGGTCAGAATTATGGGACCAAATTATGTCCCTGGGGAGAAGAAAGATCTATATGTGAAAA 1189 0.4415 KSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDETKMMERLWGENFFDPATKKWTTKNTGSPSCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLKKLNVTMKSDEKELLGKPLMKRVMQTWLPASSALLEMMIFHLPSPSTAQRYRVENLYEGPLDDQYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFAGKVSTGLKVRIMGPNYVPGEKKDLYVK 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme15288g00001 396 FunFam Translation elongation factor 2 1 206 - -
Trme15288g00001 396 NCBIfam small GTP-binding protein domain 1 145 IPR005225 GO:0005525
Trme15288g00001 396 Gene3D - 1 178 IPR027417 -
Trme15288g00001 396 SUPERFAMILY Translation proteins 311 394 IPR009000 -
Trme15288g00001 396 FunFam Translation elongation factor 2 312 396 - -
Trme15288g00001 396 Pfam Elongation factor Tu GTP binding domain 1 311 IPR000795 GO:0003924|GO:0005525
Trme15288g00001 396 Gene3D Yeast translation eEF2 (G' domain) 191 295 - -
Trme15288g00001 396 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 1 395 - -
Trme15288g00001 396 FunFam Elongation factor 2 191 295 - -
Trme15288g00001 396 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 310 IPR027417 -
Trme15288g00001 396 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 27 42 IPR031157 -
Trme15288g00001 396 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 1 313 IPR000795 GO:0003924|GO:0005525
Trme15288g00001 396 CDD EF2 1 199 - -
Trme15288g00001 396 PRINTS GTP-binding elongation factor signature 122 131 IPR000795 GO:0003924|GO:0005525
Trme15288g00001 396 PRINTS GTP-binding elongation factor signature 70 80 IPR000795 GO:0003924|GO:0005525
Trme15288g00001 396 PRINTS GTP-binding elongation factor signature 34 42 IPR000795 GO:0003924|GO:0005525
Trme15288g00001 396 PRINTS GTP-binding elongation factor signature 86 97 IPR000795 GO:0003924|GO:0005525
Trme15288g00001 396 Gene3D Translation factors 312 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme15288g00001 Trme-Chr15288 8 1196 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme15288g00001 1 396 Eukaryotic Initiation Factors Gene Family AT1G56070 93.939 0.0 788