Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme152596g00001 CCAATATCTGATGTCTCTAGTGATCTTACCATTGAAGTAGGAGCTTCAAGCTTTGCACTTCACAAGTTTCCTCTAGTTTCTAGGAGTGGAAGAATTAGGAAACTATTGTTAGAATCAAGAGATTCGAAAGTGTCGCGCATAAGTCTCCCAAGTGTACCAGGTGGTGCAGAGGCATTCGAGCTAGCTGCGAAATTCTGTTATGGAATTAACATCGAGATCACTCTCTCCAATGTTGCTATGCTAAGATGCATAGCTCATTTTCTAGAAATGACAGAAGACTTTGCCGAGAAAAACTTGTTGACGCGAGCCGAATCAT 316 0.4177 PISDVSSDLTIEVGASSFALHKFPLVSRSGRIRKLLLESRDSKVSRISLPSVPGGAEAFELAAKFCYGINIEITLSNVAMLRCIAHFLEMTEDFAEKNLLTRAES 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme152596g00001 105 FunFam BTB/POZ domain-containing protein At1g03010 1 103 - -
Trme152596g00001 105 Pfam BTB/POZ domain 6 92 IPR000210 GO:0005515
Trme152596g00001 105 Gene3D Potassium Channel Kv1.1; Chain A 3 104 IPR011333 -
Trme152596g00001 105 SMART BTB_4 7 99 IPR000210 GO:0005515
Trme152596g00001 105 ProSiteProfiles BTB domain profile. 7 75 IPR000210 GO:0005515
Trme152596g00001 105 PANTHER OS12G0117600 PROTEIN 3 104 IPR043454 -
Trme152596g00001 105 SUPERFAMILY POZ domain 4 92 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme152596g00001 Trme-Chr152596 125 540 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme152596g00001 1 105 EF-hand Containing Proteins AT2G47860 53.906 7.44e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Trme152596g00001 BTB 1.3e-08 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme152596g00001 - - mtr:25484768 189.119