Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme152449g00001 ACCCGTTGCCTAGTCTATGAGCTTGTCCCGAATGGAAGTGTGGAATCCCACTTGCATGGTGCTGACAAGGAAAGTGATCCATTGGATTGGAATTCCCGGATGAAGATTGCTCTTGGTGCAGCTCGAGGATTGGCTTATTTGCATGAAGATTCCAATCCATATGTCATACACCGGGACTTCAAGTCCAGTAACATCTTGTTGGAATATGATTTTACAGCGAAGGTTTCGGATTTTGGATTGGCTAGAACAGCACTGGAAGAGGGAAACAAACACATCTCCACACATGTCATGGGTACATTCGGGTAA 306 0.4542 TRCLVYELVPNGSVESHLHGADKESDPLDWNSRMKIALGAARGLAYLHEDSNPYVIHRDFKSSNILLEYDFTAKVSDFGLARTALEEGNKHISTHVMGTFG 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme152449g00001 101 FunFam Protein kinase superfamily protein 9 83 - -
Trme152449g00001 101 ProSitePatterns Serine/Threonine protein kinases active-site signature. 55 67 IPR008271 GO:0004672|GO:0006468
Trme152449g00001 101 PANTHER OS01G0750732 PROTEIN 2 101 - -
Trme152449g00001 101 SUPERFAMILY Protein kinase-like (PK-like) 2 100 IPR011009 -
Trme152449g00001 101 Pfam Protein tyrosine and serine/threonine kinase 3 90 IPR001245 GO:0004672|GO:0006468
Trme152449g00001 101 Gene3D Transferase(Phosphotransferase) domain 1 1 101 - -
Trme152449g00001 101 ProSiteProfiles Protein kinase domain profile. 1 101 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme152449g00001 Trme-Chr152449 55 462 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme152449g00001 2 101 Receptor kinase-like Gene Family AT5G56890 82.178 1.11e-52 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Trme152449g00001 PK_Tyr_Ser-Thr 2.3e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme152449g00001 - - qsu:112040667 198.749