Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme15234g00001 ATGGGTCGTCGCAAAATTGAGATTGAGATGGTGAAAGACACCTATACGAGGCAGGTCACATTCTCAAAGCGTCGAACAGGCTTATTCAAGAAAGCAAATGAACTGTCTATTTTGTGTGGAGCAGAAGTCGTTATTGTTGTGTTTTCTCCAGGGAATAAGCCATACTCTTTTGGTCACCCAGGAGTTGATGTTGTTGCGGCCAAGTATCTTCAACAAGATCCTAAATCATGTGACTCCCAAGGAGACCCCTCTTCTGATGCTTCCAATATGGACGAGTTGAATTTGGAACTTGCTGAGGTGTTGGACCAAATTTGTGAAGGTGAAAAGGAGGCAGAGACTCGTGATGAGATCTTGAAGCAAAATGACATGACAACACTCTCTGAGCTTGAAGAATTGAGAGATTCCTATAAAGAACTTCAAGATTGGGTAAAATTGCGTCTTAGTGATCTCAAGATATCAGAATATATGATGCTTCTTGCTAAGGAGCCAGTGGTGGGGGTTCAAGCAAAATCTGCAAAAAATAGGAATAGAAGAAAAAATTGA 543 0.4125 MGRRKIEIEMVKDTYTRQVTFSKRRTGLFKKANELSILCGAEVVIVVFSPGNKPYSFGHPGVDVVAAKYLQQDPKSCDSQGDPSSDASNMDELNLELAEVLDQICEGEKEAETRDEILKQNDMTTLSELEELRDSYKELQDWVKLRLSDLKISEYMMLLAKEPVVGVQAKSAKNRNRRKN 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme15234g00001 180 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trme15234g00001 180 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trme15234g00001 180 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trme15234g00001 180 FunFam Agamous-like MADS-box protein AGL62 13 79 - -
Trme15234g00001 180 PANTHER MADS BOX PROTEIN 3 143 - -
Trme15234g00001 180 Gene3D - 14 82 IPR036879 GO:0003677|GO:0046983
Trme15234g00001 180 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Trme15234g00001 180 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trme15234g00001 180 SUPERFAMILY SRF-like 1 74 IPR036879 GO:0003677|GO:0046983
Trme15234g00001 180 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme15234g00001 Trme-Chr15234 598 1140 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme15234g00001 1 161 Type I MADS-box Gene Family AT2G34440 43.353 3.58e-36 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trme15234g00001 SRF-TF 4.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme15234g00001 - - mtr:11439559 249.98