Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme15231g00001 ATGTCGTCGGATTCTCTTGGTGATCAGCCTTGCATTGCGCCTTCGCCTTTGCCTGTTTCTGTTGTTCACAAATTGCAGGCTATTCTCGGTAGGTTGAGAGCTAATGATAGACTTGATAAATGTGTGTCAATTTACGTTGAAGTTAGAAGTTCTAATGTGAGGGCGAGTTTGCAGGCGCTGAATTTGGATTACCTTGAGATCTCGGTGTCTGAGTTCAATGATGTGCAGAGTATAGAGGTGTATATAGCTCAATGGGGAAAGCATTTGGAGTTTGCGGTGAAGCATTTGTTTGAGGCTGAGTATAAGCTTTGTAATGATGTGTTTGAGAGGCTTGGACTCGATGTGTGGATGGGTTGCTTTTCAAAGATAGCTGCACAGGCTGGTATACTTGCATTTCTTCAGTTTGGTAAGACTGTTACCGAGAGTAAGAAAGATCCCATTAAGCTTTTGAAGTTGTTGGATATTTTTGCGTCNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNCAAAATTTGACTAGGGAACTTATTAAGAGTGTGATTGATGGTGCAGCGGAAATTTTCTGGGAACTTTTGGTTCAAGTAGAGTTACAGAGGCAGAACCCTCCTCCTCCAGATGGCAATGTCCCGAGATTGGTGAGCTTTATCACTGATTACTGCAATAAACTCTTGGGGGACGACTATAAGCCTATACTGACTCAAGTCCTGATCATTCACCGAAGTTGGAAGCGTCAAAGTTTTCATNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTTGAATTAAATTTGGAGACATGGATCAAGGCTTATGATGATCCTATGTTGTCAAGCTTTTTCGCCATGAACAATCACTGGCATCTGTTCAAGCATTTGAAAGGGACAAAGCTTGGAGATCTTTTAGGGGATTCTTGGTTAAAGGAACATGAACAGTATAAGGACTATTACTCCACAACATTCTTGCGAGATAGCTGGGGAAAGCTTCCTGGACATTTGAGTAGGGAAGGGTTGATTCTTTTCTCTGGAGGGCGTGCAACAGCTCGTGATCTGGTCAAGAAAAGATTGAAAAAGTTCAACGAAGTTTTCGATGATATGTATTCAAAGCAGTCGGGTTGGATCATGGTCGAGCGAGATCTAAGAGAGAAGACGTGTCAGCTTATAGTGCAGGCTGTGGTGCCTGTTTACCGGAGTTACATGCAGAATTACGGTCCCTTGGTCGAGCAAGATGCCAGCTCTAATAAATATGCAAAATACACAGTACAGAAGCTCGAAGAAATGCTTTTGTGTCTTTACCGGCCGAAGCCTGCAAGACACGGAAGCTTGAAAAGTCCGCAGCTTAGTGGAAAGTACGGCAATGGAATACCCGATCTTCGTCGAACGGCTTCTGCAGTCGTGTAG 1434 0.4031 MSSDSLGDQPCIAPSPLPVSVVHKLQAILGRLRANDRLDKCVSIYVEVRSSNVRASLQALNLDYLEISVSEFNDVQSIEVYIAQWGKHLEFAVKHLFEAEYKLCNDVFERLGLDVWMGCFSKIAAQAGILAFLQFGKTVTESKKDPIKLLKLLDIFASXXXXXXXXXXXXXXXXXXXXQNLTRELIKSVIDGAAEIFWELLVQVELQRQNPPPPDGNVPRLVSFITDYCNKLLGDDYKPILTQVLIIHRSWKRQSFHXXXXXXXXXXXXXXXELNLETWIKAYDDPMLSSFFAMNNHWHLFKHLKGTKLGDLLGDSWLKEHEQYKDYYSTTFLRDSWGKLPGHLSREGLILFSGGRATARDLVKKRLKKFNEVFDDMYSKQSGWIMVERDLREKTCQLIVQAVVPVYRSYMQNYGPLVEQDASSNKYAKYTVQKLEEMLLCLYRPKPARHGSLKSPQLSGKYGNGIPDLRRTASAVV 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme15231g00001 477 Coils Coil 257 257 - -
Trme15231g00001 477 Gene3D Exocyst complex component Exo70 1 450 - -
Trme15231g00001 477 SUPERFAMILY Cullin repeat-like 11 443 IPR016159 -
Trme15231g00001 477 Pfam Exo70 exocyst complex subunit 84 439 IPR046364 GO:0000145|GO:0005546|GO:0006887
Trme15231g00001 477 PANTHER EXOCYST COMPLEX PROTEIN EXO70 14 439 IPR004140 GO:0000145|GO:0006887
Trme15231g00001 477 Coils Coil 273 277 - -
Trme15231g00001 477 Coils Coil 179 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme15231g00001 Trme-Chr15231 34 1467 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme15231g00001 2 477 EXO70 exocyst subunit family AT4G31540 71.218 0.0 707
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme15231g00001 K07195 - gmx:100796139 793.497