Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme15229g00001 ATGGATTTTTGTGTTAGACTAGTTTGCAATGTCACCTTGCATACACAGTTTCAAATTGCATACTGCCCCGATGGGGACTTTGATTCATTTGATTTACGGAAGCGGCTTCCAGCTGTAATTAGCAAATTATACAAGGCAATCAAATCCAATGGGGGTGTGACATATATACACTGTACTGCTGGACTTGGAAGAGCTCCAGCTGTTGCG 207 0.4251 MDFCVRLVCNVTLHTQFQIAYCPDGDFDSFDLRKRLPAVISKLYKAIKSNGGVTYIHCTAGLGRAPAVA 69
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme15229g00001 69 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 19 69 - -
Trme15229g00001 69 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 69 IPR029021 -
Trme15229g00001 69 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 34 69 IPR000387 GO:0016311|GO:0016791
Trme15229g00001 69 Gene3D Protein tyrosine phosphatase superfamily 4 69 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme15229g00001 Trme-Chr15229 285 661 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme15229g00001 14 69 Protein tyrosine phosphatase (PTP) family AT3G52180 66.071 8.51e-23 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme15229g00001 - - mtr:25484855 91.2781