Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme15212g00001 ATGTTATACATTCTTCTATGTGGTGTTCCACCATTTTGGGCAGAATCTGAAAATGGGATATTCAATGCCATCCTAAGAGGCCACGTTGACTTTTCGAGCGATCCATGGCCCTCCATTTCACCTCAAGCAAAAGATCTTGTAAGGAAAATGTTGAATTCAGATCCTAAGCAGAGGCTAACAGCATATGAAGTTTTGAATCATCCTTGGATCAAGGAAGATGGAGAAGCACCAGATACACCTCTTGATAATGCAGTGCTCAATAGGCTCAAACAGTTTAGAGCAATGAATCAATTCAAGAAAGTTGCTCTAAAGGTTATTGCTAGCTGCCTATCAGAGGAAGAAATCATGGGATTGAAGCAGATGTTTAAGGGTATGGACACTGACAACAGTGGAACCATTACAATTGAAGAGCTCAAGCAAGGACTTGCAAAACAAGGAACTAAACTGTCTGAAGCAGAAGTTAAGCAATTAATGGAAGCTGCAGATGCTGATGGTAATGGAATCATAGACTACGACGAGTTCATCACAGCAACAATGGCCATGAACCGAATGAACAGAGAAGAACATGTTTACACTGCCTTCCAATACTTCGATAAAGATAACAGCGGGTACATCACCATTGAAGAATTAGAGCAAGCTCTCCATGAGTATAACATGCATGATGGCAGGGACATCAAGGAAATCATTTCAGAAGTTGATGCAGATAAT 708 0.4068 MLYILLCGVPPFWAESENGIFNAILRGHVDFSSDPWPSISPQAKDLVRKMLNSDPKQRLTAYEVLNHPWIKEDGEAPDTPLDNAVLNRLKQFRAMNQFKKVALKVIASCLSEEEIMGLKQMFKGMDTDNSGTITIEELKQGLAKQGTKLSEAEVKQLMEAADADGNGIIDYDEFITATMAMNRMNREEHVYTAFQYFDKDNSGYITIEELEQALHEYNMHDGRDIKEIISEVDADN 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme15212g00001 236 ProSiteProfiles EF-hand calcium-binding domain profile. 113 148 IPR002048 GO:0005509
Trme15212g00001 236 FunFam Calcium-dependent protein kinase 1 78 236 - -
Trme15212g00001 236 ProSitePatterns EF-hand calcium-binding domain. 162 174 IPR018247 -
Trme15212g00001 236 Gene3D - 88 236 - -
Trme15212g00001 236 ProSiteProfiles EF-hand calcium-binding domain profile. 185 220 IPR002048 GO:0005509
Trme15212g00001 236 ProSiteProfiles Protein kinase domain profile. 1 70 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme15212g00001 236 Gene3D - 111 179 - -
Trme15212g00001 236 SMART efh_1 117 145 IPR002048 GO:0005509
Trme15212g00001 236 SMART efh_1 189 217 IPR002048 GO:0005509
Trme15212g00001 236 SMART efh_1 153 181 IPR002048 GO:0005509
Trme15212g00001 236 Gene3D Transferase(Phosphotransferase) domain 1 1 71 - -
Trme15212g00001 236 Pfam EF-hand domain 191 215 IPR002048 GO:0005509
Trme15212g00001 236 ProSitePatterns EF-hand calcium-binding domain. 126 138 IPR018247 -
Trme15212g00001 236 Coils Coil 135 155 - -
Trme15212g00001 236 ProSiteProfiles EF-hand calcium-binding domain profile. 149 184 IPR002048 GO:0005509
Trme15212g00001 236 Pfam Protein kinase domain 1 70 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme15212g00001 236 SUPERFAMILY Protein kinase-like (PK-like) 1 99 IPR011009 -
Trme15212g00001 236 PANTHER SERINE/THREONINE-PROTEIN KINASE 1 236 - -
Trme15212g00001 236 Pfam EF-hand domain pair 118 178 IPR002048 GO:0005509
Trme15212g00001 236 SUPERFAMILY EF-hand 110 236 IPR011992 -
Trme15212g00001 236 ProSitePatterns EF-hand calcium-binding domain. 198 210 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme15212g00001 Trme-Chr15212 102 1325 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme15212g00001 1 236 EF-hand Containing Proteins AT5G12180 86.017 4.58e-154 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trme15212g00001 EF-hand_7 1.7e-12 CL0220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme15212g00001 K13412 - gmx:100819061 447.203