Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme152051g00001 GAGCAGATTCAAAGGCTTATTTTAGCAAGGAATAAATTCTCCGGCGAGATTCCGGCCGGTGTATGGTCGGAACTCGGTAATCTCATCCAGCTTGACCTCTCCGCCAACGATTTCAAAGGTCCAATCCCGGAAGATATTGGTGAACTTCATACCCTCTCTGGTACACTAAACCTCTCGTTCAACCACCTCTCTGGTCGGATTCCGAACTCACTCGGGAAATTGTCGGCCACCGTGAACTTTGATCTCCGAAACAACAACCTAATTGGCGAGATTCCCCAAACAGGAACATTTTCGAACCAGGGTCCAACTGCATTCCTCGGTAACAAAAACCTGTGCGGACTTCCACTTAGAAAGTCCTGCACAGGCTCAGACCAAGGGTCAGGTTCCGATTCGTCTTCTCGCAAAGATGAACCGAGTAACCGTTCGAAAGGGTTGAGCCCTGGTTTGATTATTTTGATCTCAGCAGCCGATGTTGTCGGGGTCGCTCTTGTTGGACTTGTGATTGTGTATGTTTATTGGAAGAAAAAGGATGATGACAAT 540 0.4778 EQIQRLILARNKFSGEIPAGVWSELGNLIQLDLSANDFKGPIPEDIGELHTLSGTLNLSFNHLSGRIPNSLGKLSATVNFDLRNNNLIGEIPQTGTFSNQGPTAFLGNKNLCGLPLRKSCTGSDQGSGSDSSSRKDEPSNRSKGLSPGLIILISAADVVGVALVGLVIVYVYWKKKDDDN 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme152051g00001 180 Gene3D Ribonuclease Inhibitor 1 127 IPR032675 -
Trme152051g00001 180 Pfam Leucine Rich Repeat 55 74 IPR001611 GO:0005515
Trme152051g00001 180 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 7 153 IPR045273 -
Trme152051g00001 180 Pfam DNA binding protein S1FA 141 175 IPR006779 GO:0003677|GO:0005634|GO:0006355
Trme152051g00001 180 MobiDBLite consensus disorder prediction 120 143 - -
Trme152051g00001 180 SUPERFAMILY L domain-like 3 117 - -
Trme152051g00001 180 FunFam Leucine-rich repeat receptor-like protein kinase 27 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme152051g00001 Trme-Chr152051 2 541 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme152051g00001 1 179 Receptor kinase-like Gene Family AT1G67510 63.687 1.22e-73 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF S1Fa-like Trme152051g00001 S1FA 6.2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme152051g00001 - - gmx:100787556 257.684