Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme151g00001 ATGGCGGACTCTGATAGTGACGAAGTAAAAATTACAGTCACGCTCATCGTTCCACCTCCAGAAACAGTGCCGCCGAATGGTGATGAAGTGGCACGAGCTACGGATGCTGTTGCTGAAACGGTGTCGTTGAACGTCGACGGTGAAGGTTCGATTAATGGCAATGGCGATGATGTGGAAGCAGCTGAAGAATCCGTTCTTCATCGAGACAGTGAAGGTGGTGGCGTGGCAGTTGATGAAGAACGACGACGTGCAGCTGAAGAATCCGCTGAAGGTGTTGATGTTGTAGGCGTAACATCCGGAAGCTCTGTTTCCGATGAAGTTATCATCGGAAAGCGCGGGAGTAAGAGAAGAGCAATTGTCATTAGTTCCGATGAAGAAGATGAAGTAGAACAGAAGGTGATTGAAAAGAAGGAGTCTTCATCGTGCCATCAATGTAAGAGAAATGTTAAGGGCAGGGTTGTCAGATGCACAAAATGCAAACAGAGAAGATTCTGCATACCTTGTTTAACTAAATGGTATCCTAAATCGAAAGAGATTTATGTTGCTGAGGCGTGTCCAGTATGCCGTAATAATTGCAATTGCATAAGATGCTTGCGATCGTCTAAACTCATCAATGAAATGAAGCGTACGGGTACAAGTAAAACCAACAAGGATGAGGAGGCTGAGTTCTCCAAGTATCTGCTGAAAACACTTCTTCCGTCTTTAATACAGTTGGATGAAGATCATATGATTGAGAAGGAGATCGAAGCCAATAGACAAGGGCTCTCATTCTCATTCTCAAAGTTAGTATGCAAGGCAATAGGCCTTGCAGAAACATTTAAGATTCAAGATGGAGAGGAGACTGCTGATAATAGGTGTTCCTGCTTGAACCTTGATATGAACGCCGATGATATACACAATAATACAAGGAATGCAGCTTTTCGTGAAGATTCCAATGACAACTTTTTATATTGTCCTAGAGCTGTAGATGTACATCATGAAGGTTTAAGACATTTTCAGTGCCATTGGAGTAAAGGGGAGCCTGTAATTGTCAGCAATGTACTCAAATGTTCATCTGGTTTAAGTTGGGAACCACTGGTCATGAGTCGTGCATTCCGTCAAATAACCAAGTCCAAGCAGGATGCAATTTTGAATGTGAAGGCAGTTAATTGCTTAGATTCGTGTGAGGAAGACATTAATATCCACCAATTCTTTAATGGGTACATAAATTGTCTCAAGGATCGGCGTGATTTGCCTCGGGTGTTGAAATTAAAAGACTGGTCTCCTAATTTATTTCAGGAACTTTTACCTCGTCATTATGCTGAGTTCATATCTTTCTTGCCTTATAAAGAATATACTGATCCTTTTAAAGGTTCTCTGAACCTTGCTGTGAAGTTGCCGAATAATTGTGTAATGCCAGACATGGGGCCAAGAACATATATTGCTTATGGATTTGCTCAGGAGTTTGGACGTGGTGATTCCGTGACTAAGCTACATTGCGATGCGACTGATGTAGTAAATGTGTTGACTCATATTCATGAAGTGGAATTGAAGTCTGATAGAATCAAAGCCAATAAGAAACTAACACAAAAGCACCTCAAGCAAGACAAGAGGGAGCTACATCTATATGGTGATAATCAAGATGGAGAGACTAATGTTGGCGCGCTTGATAATTCATTGTCTTCGGGGGATTCTTTAGATGGTGCTCTCTGGGATATATTTCGGAGAGAGGATGTACCAAAATTGGAGGAATATCTAAAGAAGCATTTCAGAGAGTTCAGGCATGTACATTGCTTTCCTTTAGAGCAGGTTGTTCACCCTATCCATGATCAGACATTTTATTTGACTATCGAGCATAAGAAGAAGCTTAAGGAGGAGTATGGAATCGAGCCCTGGACTTTTGTTCAGAAGCTAGGAGATGCTGTCTTCGTTCCAGCTGGTTGTCCACACCAAGTCCGAAATCTGAAGTCATGCACGAAGGTTGCACATGATTTTGTGTCTCCTGAGAATGTTGGTGAGTGCTTTCGTTTGACGGAGGAATTCCGCAAACTTCCTATAAATCACAGGTCCACAGAGGACAAATTGGAGGTGAAGAAAATGATTGTATATGCTATGCTTGATGTGGTCAAAAAGTTGGAGGAAGCAAGGTCTGGAGAAACCAAGGTTCCAAAGTAA 2154 0.4201 MADSDSDEVKITVTLIVPPPETVPPNGDEVARATDAVAETVSLNVDGEGSINGNGDDVEAAEESVLHRDSEGGGVAVDEERRRAAEESAEGVDVVGVTSGSSVSDEVIIGKRGSKRRAIVISSDEEDEVEQKVIEKKESSSCHQCKRNVKGRVVRCTKCKQRRFCIPCLTKWYPKSKEIYVAEACPVCRNNCNCIRCLRSSKLINEMKRTGTSKTNKDEEAEFSKYLLKTLLPSLIQLDEDHMIEKEIEANRQGLSFSFSKLVCKAIGLAETFKIQDGEETADNRCSCLNLDMNADDIHNNTRNAAFREDSNDNFLYCPRAVDVHHEGLRHFQCHWSKGEPVIVSNVLKCSSGLSWEPLVMSRAFRQITKSKQDAILNVKAVNCLDSCEEDINIHQFFNGYINCLKDRRDLPRVLKLKDWSPNLFQELLPRHYAEFISFLPYKEYTDPFKGSLNLAVKLPNNCVMPDMGPRTYIAYGFAQEFGRGDSVTKLHCDATDVVNVLTHIHEVELKSDRIKANKKLTQKHLKQDKRELHLYGDNQDGETNVGALDNSLSSGDSLDGALWDIFRREDVPKLEEYLKKHFREFRHVHCFPLEQVVHPIHDQTFYLTIEHKKKLKEEYGIEPWTFVQKLGDAVFVPAGCPHQVRNLKSCTKVAHDFVSPENVGECFRLTEEFRKLPINHRSTEDKLEVKKMIVYAMLDVVKKLEEARSGETKVPK 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme151g00001 717 SMART cupin_9 429 675 IPR003347 -
Trme151g00001 717 MobiDBLite consensus disorder prediction 45 80 - -
Trme151g00001 717 Pfam JmjC domain, hydroxylase 562 658 IPR003347 -
Trme151g00001 717 ProSiteProfiles JmjC domain profile. 448 675 IPR003347 -
Trme151g00001 717 SUPERFAMILY Clavaminate synthase-like 328 694 - -
Trme151g00001 717 ProSiteProfiles Zinc finger RING-type profile. 142 189 IPR001841 -
Trme151g00001 717 FunFam Transcription factor jumonji domain-containing protein 313 684 - -
Trme151g00001 717 Gene3D Cupin 315 684 - -
Trme151g00001 717 MobiDBLite consensus disorder prediction 60 80 - -
Trme151g00001 717 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 260 710 IPR045109 GO:0032454|GO:0033169
Trme151g00001 717 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 136 204 IPR018866 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme151g00001 Trme-Chr151 330 5053 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trme151g00001 JmjC 3.6e-15 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme151g00001 K15601 - thj:104802301 558.14