Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme15199g00001 ATGCTCAAACAAAGCCTCAAGGGGCCGGGTGCACAAGTTGTGTATTCAAAGTATGCAGGTACTGAGGTTGATTTCAACGGTGAAAAGCATCTTATTTTGAAGGATGATGACATTGTTGGTATCCTTGAAACCGATGACATCAAGGATCTTAAACCCTTGAATGATAGAGTTTTGATACAGATTGAAAAAGCTGAAGAAAAAACTGCCGGCGGTTTGTTTCTTACACAGGCAACCAAGGAGAAACCTTCCTTTGGAACG 258 0.4147 MLKQSLKGPGAQVVYSKYAGTEVDFNGEKHLILKDDDIVGILETDDIKDLKPLNDRVLIQIEKAEEKTAGGLFLTQATKEKPSFGT 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme15199g00001 86 PRINTS 10kDa chaperonin signature 50 65 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trme15199g00001 86 PRINTS 10kDa chaperonin signature 72 86 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trme15199g00001 86 SUPERFAMILY GroES-like 48 86 IPR011032 -
Trme15199g00001 86 CDD cpn10 50 86 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trme15199g00001 86 CDD cpn10 9 42 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trme15199g00001 86 ProSitePatterns Chaperonins cpn10 signature. 50 74 IPR018369 GO:0005524|GO:0006457
Trme15199g00001 86 Pfam Chaperonin 10 Kd subunit 50 85 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trme15199g00001 86 Pfam Chaperonin 10 Kd subunit 4 41 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trme15199g00001 86 PANTHER 10 KDA HEAT SHOCK PROTEIN 47 83 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trme15199g00001 86 Gene3D GroES chaperonin 45 86 IPR037124 GO:0006457
Trme15199g00001 86 Gene3D GroES chaperonin 5 44 IPR037124 GO:0006457
Trme15199g00001 86 SUPERFAMILY GroES-like 9 43 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme15199g00001 Trme-Chr15199 457 1304 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme15199g00001 10 86 Calmodulin-binding Proteins AT5G20720 79.221 8.12e-40 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme15199g00001 K04078 - gmx:100814751 137.502