Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme151998g00001 ATGTTAAGACTACCATGTTATTGTTGTGCTAATGGTTGCAAGAACAACATCAATCATCCAAGAGCAAGACCATTGAAAGACTTTAGAACTCTTCAAACTCATTACAAAAGAAAGCATGGAACAAAACCATTTATTTGCAGAAAATGTTCTAAAGCATTTGCTGTTAAAGGTGATTGGAGAACTCATGAGAAAAATTGTGGAAAGTTTTGGTATTGCACTTGTGGTTCCGATTTTAAACACAAAAGATCTCTTAAAGATCATGTTAGATCCTTCGGAAAAGGTCACTCCCCAAATCCTTCTCTTGAAGGGTTCGAAGACGAGAAAGAATGTAGCAATACCGGATCTGATGATGATGAAGTTGTTCATGCATGA 372 0.3629 MLRLPCYCCANGCKNNINHPRARPLKDFRTLQTHYKRKHGTKPFICRKCSKAFAVKGDWRTHEKNCGKFWYCTCGSDFKHKRSLKDHVRSFGKGHSPNPSLEGFEDEKECSNTGSDDDEVVHA 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme151998g00001 123 Gene3D Classic Zinc Finger 3 93 - -
Trme151998g00001 123 PANTHER ZINC FINGER PROTEIN WIP2 1 112 IPR043584 GO:0003700|GO:0010468
Trme151998g00001 123 MobiDBLite consensus disorder prediction 100 123 - -
Trme151998g00001 123 FunFam Zinc finger protein WIP2 13 95 - -
Trme151998g00001 123 SUPERFAMILY beta-beta-alpha zinc fingers 30 64 IPR036236 -
Trme151998g00001 123 MobiDBLite consensus disorder prediction 88 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme151998g00001 Trme-Chr151998 94 465 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme151998g00001 1 113 C2H2 Transcription Factor Family AT1G08290 81.739 3.10e-68 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trme151998g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme151998g00001 - - tpra:123899635 277.33