Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme151794g00001 GGATATTACAAGTGCAGCAGCATGAGAGGCTGCCCTGCTAGGAAGCATGTCGAGAGGTGCTTGGAAGAGCCTACTATGCTGATTGTTACCTATGAAGGTGATCATAACCACCCCAAGGTACCGACACAATCTGCAAATGCATGA 144 0.4861 GYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGDHNHPKVPTQSANA 47
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme151794g00001 47 Gene3D WRKY domain 1 41 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trme151794g00001 47 SMART WRKY_cls 1 39 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme151794g00001 47 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 1 45 IPR044810 GO:0003700
Trme151794g00001 47 Pfam WRKY DNA -binding domain 2 38 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme151794g00001 47 ProSiteProfiles WRKY domain profile. 1 40 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme151794g00001 47 SUPERFAMILY WRKY DNA-binding domain 2 39 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme151794g00001 Trme-Chr151794 121 264 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme151794g00001 1 44 WRKY Transcription Factor Family AT2G30590 84.091 6.11e-24 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trme151794g00001 WRKY 2.1e-13 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme151794g00001 - - gmx:100170681 103.605