Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme151708g00001 ATGCTTTCGTCGCATGTTGTTGGCACCCCTGGCTATATTGCACCAGAGAATGCATATGATATAATGCCGGGAAGAATGTCTGATGTATATAGTTACGGAGTTGTTTTGCTTGAGCTAATAACCAGAAAGAAATTATTAGTTCCGTCTATAAATGATGAGGCGAACGAGATCCACATAGTGACCTGGTCTAGAGCTTTAATGATGGAAACAGGCAAGATTGAGAACATTGTTGATCCTTACCTTGTAAGTGAATTTCCCAATTCAATAGCACTAGCCAAACAAGTCACTGCAGTGCTTTCATTGGCATTACAGTGCACAGAGAAG 324 0.4074 MLSSHVVGTPGYIAPENAYDIMPGRMSDVYSYGVVLLELITRKKLLVPSINDEANEIHIVTWSRALMMETGKIENIVDPYLVSEFPNSIALAKQVTAVLSLALQCTEK 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme151708g00001 108 Pfam Protein kinase domain 4 61 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme151708g00001 108 ProSiteProfiles Protein kinase domain profile. 1 108 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme151708g00001 108 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 3 107 - -
Trme151708g00001 108 SUPERFAMILY Protein kinase-like (PK-like) 3 105 IPR011009 -
Trme151708g00001 108 Gene3D Transferase(Phosphotransferase) domain 1 1 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme151708g00001 Trme-Chr151708 1 492 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme151708g00001 3 108 Receptor kinase-like Gene Family AT1G73080 45.946 1.49e-22 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trme151708g00001 Pkinase 5.9e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme151708g00001 - - mtr:11425196 180.644