Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme151642g00001 ATGTTTGGAATTGAGGGAAAATTAGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTGTTCGTCGACCGGGAGAATGATGTTCTTCTCCTTGGCGACGATCCGTGGGAATCATTCGTGAATAACGTTTGGTATATCAAAATACTTTCACCGGAAGATATTCAGAAGATGGGAGAACAAGCGGTAGAAACGCTTGCGCTAGGTTCAGGACAAAGGCTTAACGGCAGTGGTGAATCTCACCACATTGTTTCTGGACAACCACCATC 263 0.4601 MFGIEGKLEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGEQAVETLALGSGQRLNGSGESHHIVSGQPPS 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme151642g00001 88 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 57 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trme151642g00001 88 ProSiteProfiles PB1 domain profile. 1 52 IPR000270 GO:0005515
Trme151642g00001 88 MobiDBLite consensus disorder prediction 69 88 - -
Trme151642g00001 88 Pfam AUX/IAA family 14 53 IPR033389 -
Trme151642g00001 88 Gene3D - 1 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme151642g00001 Trme-Chr151642 1 380 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme151642g00001 1 59 B3 DNA Binding Superfamily AT5G37020 84.746 9.72e-32 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Trme151642g00001 AUX_IAA 9.4e-06 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme151642g00001 - - tpra:123913862 181.03