Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme151610g00001 ATGCAAGCACATAGAATTTATGGAAACAAATGGGCCATGATAGCAAGACTATTCCCAGGAAGAACAGACAATGCTGTAAAGAATCATTGGCATGTTATAATGGCAAGAAAGTACAGAGAACAATCTAGTGCATACAGGAGAAGAAGATTAAGCCAAAATGTTTACAGAAGAATGGATCAAAATCCAAGCTTTATCTGCAAAGACACTACAACCACAACAATGGAAACAGAATCATCATCACCTTATTTTCTTAATGGAGCCCCACTTGGAAATAGTATGTCCATTTTCCCATATGCTACTTCTTTCCAACATGGTGTTCATGGTGGTGGGGTTGATTATGGTTTAAATATTTTACCTCACATGAGTGGTGAGAGAGAAGCTATGAAAGGACCCCTACATGTTGGTCTCTATGCTCAACAAGCACCATTTGATTTCTTCTCTGGTTTGTGTCCTTTCTCTCTTTGA 465 0.3849 MQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRLSQNVYRRMDQNPSFICKDTTTTTMETESSSPYFLNGAPLGNSMSIFPYATSFQHGVHGGGVDYGLNILPHMSGEREAMKGPLHVGLYAQQAPFDFFSGLCPFSL 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme151610g00001 154 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 38 IPR017930 -
Trme151610g00001 154 Gene3D - 1 61 - -
Trme151610g00001 154 SUPERFAMILY Homeodomain-like 2 42 IPR009057 -
Trme151610g00001 154 CDD SANT 2 31 IPR001005 -
Trme151610g00001 154 PANTHER MYB PROTEIN-RELATED 1 63 - -
Trme151610g00001 154 Pfam Myb-like DNA-binding domain 2 32 IPR001005 -
Trme151610g00001 154 ProSiteProfiles Myb-like domain profile. 1 34 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme151610g00001 Trme-Chr151610 67 531 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme151610g00001 1 53 MYB Transcription Factor Family AT1G26780 86.792 3.74e-28 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trme151610g00001 Myb_DNA-binding 8.3e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme151610g00001 K09422 - gmx:100789305 182.956