Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme15152g00001 GCTACTATTGGTCAGTTACCTTGCTTAGAGATATCCTCAAGTGTAACGAGCTATGGTCGACAAATGATCGAGCACACTAAAAAGCTTGTGGAAGATAAATTTACAACACTTAATGGCTACGAACACAATGCCGAGGTAATATATGGAGACACAGATTCAGTCATGGTACAATTTGGTGTTTCTGCTGTAGAAGAGGCCATGAACTTGGGGAGAGAAGCTGCTGAATATATTAGCGGAACTTTCATAAAACCTATCAAACTAGAATTTGAGAAGATATACTATCCATATCTCCTGATCAGCAAGAAGAGATATGCTGGTTTGTTTTGGACAAAACCAGATAATTTTGACAAAATGGACACTAAAGGTATTGAAACAGTTCGAAGAGACAATTGCTTGTTGGTCAAAAACTTGGTAAACGACTGCCTTCACAAAATACTGATTGACAGGGACGTTCCTGGGGCAGTCCAGTATGTCAAGAATGCAATTTCAGATCTTCTCATGAACCGTATGGATTTATCACTTCTGGTTATTACGAAGGTGAGAAGTTTATTAGGTCTACAGAACCTCTATTGA 573 0.3874 ATIGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTLNGYEHNAEVIYGDTDSVMVQFGVSAVEEAMNLGREAAEYISGTFIKPIKLEFEKIYYPYLLISKKRYAGLFWTKPDNFDKMDTKGIETVRRDNCLLVKNLVNDCLHKILIDRDVPGAVQYVKNAISDLLMNRMDLSLLVITKVRSLLGLQNLY 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme15152g00001 190 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 1 179 - -
Trme15152g00001 190 ProSitePatterns DNA polymerase family B signature. 48 56 IPR017964 GO:0000166|GO:0003676
Trme15152g00001 190 SUPERFAMILY DNA/RNA polymerases 2 179 IPR043502 -
Trme15152g00001 190 Gene3D Palm domain of DNA polymerase 1 123 IPR023211 -
Trme15152g00001 190 Gene3D - 124 186 IPR042087 -
Trme15152g00001 190 Pfam DNA polymerase family B 2 180 IPR006134 GO:0000166|GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme15152g00001 Trme-Chr15152 125 1418 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme15152g00001 1 179 Core DNA Replication Machinery Family AT5G63960 85.475 3.76e-103 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme15152g00001 K02327 - gmx:548092 354.755