Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme151310g00001 ATGGGAAGACACTCATGCTGTTACAAGCAAAAGCTTAGGAAGGGACTATGGTCACCAGAAGAAGATGAAAAACTTCTAAGGCATATAACAAAGTATGGACATGGATGTTGGAGTTCAGTACCTAAGCAAGCAGGTTTGCAAAGATGTGGTAAGAGTTGCAGACTTAGATGGATCAATTACTTAAGACCTGATTTAAAAAGAGGAACATTTTCACAAGATGAAGAAGATCTCATTGTTGAACTTCATGCAGTATTAGGAAATAGGTAA 267 0.3745 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQDEEDLIVELHAVLGNR 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme151310g00001 88 SMART sant 13 63 IPR001005 -
Trme151310g00001 88 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trme151310g00001 88 SUPERFAMILY Homeodomain-like 16 88 IPR009057 -
Trme151310g00001 88 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trme151310g00001 88 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 88 IPR017930 -
Trme151310g00001 88 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Trme151310g00001 88 FunFam Myb transcription factor 11 67 - -
Trme151310g00001 88 Gene3D - 11 67 - -
Trme151310g00001 88 PANTHER MYB DOMAIN PROTEIN 55 1 88 - -
Trme151310g00001 88 CDD SANT 17 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme151310g00001 Trme-Chr151310 156 534 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme151310g00001 1 88 MYB Transcription Factor Family AT4G01680 95.455 2.33e-60 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trme151310g00001 Myb_DNA-binding 1.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme151310g00001 K09422 - cave:132172617 192.2