Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme151250g00001 ATGAATTCCTTTCTGTTAACTGAATCTCAGCATTCTATACCCTTGGTTTCTAACATACCTACATTGATTATTGGAATGGATGTTTCACATGGATCTCCAGGTCAATCAGATGTACCATCTATTGCTGCGGTTGTGAGCTCGAGATATTGGCCTCAAATTTCCCGTTACAGAGCTGCTGTCCGTACTCAGCCATCAAAAGTAGAGATGATG 210 0.4143 MNSFLLTESQHSIPLVSNIPTLIIGMDVSHGSPGQSDVPSIAAVVSSRYWPQISRYRAAVRTQPSKVEMM 70
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme151250g00001 70 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 10 70 - -
Trme151250g00001 70 Pfam Piwi domain 5 69 IPR003165 GO:0003676
Trme151250g00001 70 Gene3D - 8 70 IPR036397 GO:0003676
Trme151250g00001 70 SUPERFAMILY Ribonuclease H-like 16 62 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme151250g00001 Trme-Chr151250 1 322 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme151250g00001 2 70 Eukaryotic Initiation Factors Gene Family AT1G48410 44.928 7.84e-15 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme151250g00001 K11593 - gmx:100812218 110.538