Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme15104g00001 AATGGATATGAATATGAATTCATTGGAAAGATAGTTACAGAGGTGTCAAACAGGATCAATCGTGCTCCTTTACATGTTGCAGATCACCCCGTTGGATTGGAGTCTCGAGTATTAAAAGTGAAGTCACTTNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNCACGAGCCATTTACAATTTGATTTCTTACCAATTTGAAGTTTCGTGTTTTCTTCACAATGTGAAAGAACATTCAGCTAAACATGGCCTAGAACATGTCCAAGAGGAACTTCTTTCAAAAACAGTTGAATTGAATCATAAGTTAGGAGATGTTTTCGAGGGAATTCCTATCATAAAACAAAGGCTACAAGATAAGAATGTTCTATTGATTCTCGATGATGTAGACGAACTGAAGCAGCTGCAGGTTTTGGCTGGAGGGCTTGACTGGTTCGGTCCTGACAGCAAAGTCATCATTACCACTCGAGACAAACAATTGCTAGCCAATCATGGGGTTGAAATAACATATGAAGTGGATGAGTTAAATGTGGATGAAGCTCTTGAATTGTTGACGTGGAAGGCATTTAAAAACAAAAATGTTGATTCAAGTTACAAGTACATTTTACGACGTGCAGTAACTTACGCGTCTGGCCTACCATTAGCTTTAGAAGTAGTGGGTTCCAACTTGTTTGGAATGGATATAGGAGAATGGGAATCNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNCAAAAGATACTTAAAGTAAGCTTTGATTCTTTGGAAAAAGATGAGCAGAGTGTCTTTCTCGACATTGCTTGTTGCTTCAAAGGGTATAACATGACAGAGATCAAAGATATACTTCATGCTCATTACGGTCATAACATCAAATATCACATTAGAGTGTTGGTTAACAAATCTCTTATACAGATTAGTTGGCACGGGCAAAGTTATAATGTGACAGTACATGACTTGATAGAGCACATGTGTAAAGAAATTGTCCGACTAGAATCTCCTGAAGATCCTGGAGAACGCAGTAG 1070 0.3393 NGYEYEFIGKIVTEVSNRINRAPLHVADHPVGLESRVLKVKSLXXXXXXXXXXXXXXXXXXXXXXXXXXXRAIYNLISYQFEVSCFLHNVKEHSAKHGLEHVQEELLSKTVELNHKLGDVFEGIPIIKQRLQDKNVLLILDDVDELKQLQVLAGGLDWFGPDSKVIITTRDKQLLANHGVEITYEVDELNVDEALELLTWKAFKNKNVDSSYKYILRRAVTYASGLPLALEVVGSNLFGMDIGEWESXXXXXXXXXXXXXQKILKVSFDSLEKDEQSVFLDIACCFKGYNMTEIKDILHAHYGHNIKYHIRVLVNKSLIQISWHGQSYNVTVHDLIEHMCKEIVRLESPEDPGERS 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme15104g00001 356 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 3 356 IPR044974 GO:0006952
Trme15104g00001 356 PRINTS Disease resistance protein signature 223 237 - -
Trme15104g00001 356 PRINTS Disease resistance protein signature 130 144 - -
Trme15104g00001 356 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 71 282 IPR027417 -
Trme15104g00001 356 Gene3D - 188 267 IPR042197 -
Trme15104g00001 356 Gene3D - 69 182 IPR027417 -
Trme15104g00001 356 SUPERFAMILY "Winged helix" DNA-binding domain 261 348 IPR036390 -
Trme15104g00001 356 Coils Coil 40 43 - -
Trme15104g00001 356 Coils Coil 71 71 - -
Trme15104g00001 356 Gene3D - 268 343 IPR036388 -
Trme15104g00001 356 Pfam NB-ARC domain 80 237 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme15104g00001 Trme-Chr15104 388 1457 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme15104g00001 71 348 WRKY Transcription Factor Family AT5G45050 30.824 2.68e-32 126