Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme15101g00001 ATGATTTATGTACATGCCAAAGGAATGGTTGTGGATGATGAATATGTGATAGTTGGGTCTGCCAATATCAATCAACGATCTTTGGCTGGATCAAGAGATACCGAGATAGCAATGGGTGCATATCAACCCCGTCATACATGGAACAAGAAAAAGGGACATCCTCGTGGTCAGGTATATGGGTATAGAATGTCCTTGTGGGCAGAGCACTTAGGGACCATACATGACTGCTTCAAGGAGCCTGAAAGTTTGGAATGTGTGGAGAATGTGAACACGATTGCTAAAGAAAACTGGAAAAAGTATACAGCTGATGATTTTAAGCCATTGCAAGGTCACATTATGAAGTATCCCATCAAAGTGAATGCAGATGGGAAAGTAAGCTCTTTACCTGGATTTGAGTATTTCCCAGATGTCGGTGGCAAGGTGCTAGGTTGCCGTTCTACCTTTCCCGATGCTCTAACTACATAG 465 0.428 MIYVHAKGMVVDDEYVIVGSANINQRSLAGSRDTEIAMGAYQPRHTWNKKKGHPRGQVYGYRMSLWAEHLGTIHDCFKEPESLECVENVNTIAKENWKKYTADDFKPLQGHIMKYPIKVNADGKVSSLPGFEYFPDVGGKVLGCRSTFPDALTT 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme15101g00001 154 SUPERFAMILY Phospholipase D/nuclease 2 86 - -
Trme15101g00001 154 Pfam Phospholipase D Active site motif 1 27 IPR001736 GO:0003824
Trme15101g00001 154 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 1 27 IPR001736 GO:0003824
Trme15101g00001 154 PANTHER PHOSPHOLIPASE D 1 143 IPR015679 -
Trme15101g00001 154 SMART pld_4 1 27 IPR001736 GO:0003824
Trme15101g00001 154 Pfam Phospholipase D C terminal 75 144 IPR024632 -
Trme15101g00001 154 Gene3D Endonuclease Chain A 2 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme15101g00001 Trme-Chr15101 266 1092 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme15101g00001 1 153 Phospholipase D Gene Family (Wang group) AT4G00240 62.092 3.39e-68 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme15101g00001 K01115 - gmx:100795859 281.182