Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme15090g00001 ATGGTAGAATTCATTGGAATGTTGAAGATCAAAGTGATTCAAGGCACAAATTTAGCCATCCGGGATATAAAGTCAAGTGACCCATATGTTGTTTTGAACCTCGGCTCACAGACTGTACAGACAACTGTAGTGAGAAGTAATTTGAATCCAGTCTGGAATGAGGAGCATATGCTGTCTGTTCCAGAGCATTATGGACAGCTGAAATTG 207 0.4058 MVEFIGMLKIKVIQGTNLAIRDIKSSDPYVVLNLGSQTVQTTVVRSNLNPVWNEEHMLSVPEHYGQLKL 69
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme15090g00001 69 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 67 IPR035892 -
Trme15090g00001 69 Gene3D C2 domain 1 69 IPR035892 -
Trme15090g00001 69 ProSiteProfiles C2 domain profile. 1 69 IPR000008 -
Trme15090g00001 69 Pfam C2 domain 6 67 IPR000008 -
Trme15090g00001 69 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 1 69 IPR044518 GO:0005096|GO:0005543
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme15090g00001 Trme-Chr15090 940 1271 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme15090g00001 1 69 C2H2 Transcription Factor Family AT4G05330 73.913 2.90e-31 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme15090g00001 K12486 - gmx:100810806 130.568