Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme150907g00001 ATGGAGTTAGAATCACGCGCGGCGCATCTTAGAACCGAAATGCAACTTTGGCAAGCAAAAGCTAAAGAACAAGAAGCAACAGCTATTTCTCTTCAAAACCAACTGCATCATGCTATGATGAACGGTGGCGCAGAAAATAGAGGAGAAGAAGGATGTGGGCTATCGTGCGCATTAGGTGTTGAAGGTCAAGCTGAAGATGCGGAATCGGGTTATATTGATCCGGATCGGGTTGTTATTTCGGGTCCTAAATGTAAAGGGTGTGAAAAACGGGTTGCTTCGGTTGTTGTGTTGCCGTGTCGTCACTTATGTGTTTGTAACGAATGCGACACACATTTCCGTGTTTGCCCC 348 0.4598 MELESRAAHLRTEMQLWQAKAKEQEATAISLQNQLHHAMMNGGAENRGEEGCGLSCALGVEGQAEDAESGYIDPDRVVISGPKCKGCEKRVASVVVLPCRHLCVCNECDTHFRVCP 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme150907g00001 116 Coils Coil 7 34 - -
Trme150907g00001 116 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 116 IPR017066 -
Trme150907g00001 116 Pfam Zinc finger, C3HC4 type (RING finger) 83 116 - -
Trme150907g00001 116 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 116 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme150907g00001 Trme-Chr150907 48 395 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme150907g00001 80 116 C3H Transcription Factor Family AT3G06140 41.463 8.11e-06 41.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme150907g00001 K19042 - qsa:O6P43_034011 158.688