Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme150865g00001 GAAAAGCTTAATCAAAGATTCTACGCTCTACGCGCAGTGGTTCCAAATGTTTCTAAAATGGACAAAGCTTCACTTCTCGGAGACGCAATTTCTTACATAAATGAATTGAAATCAAAGCTTCAAGGACTTGAATCATCAAAAGGTGAATTAGAGAAACAATTAGATACAACAAAGAAGGAACTTGAACTAGCAAGCAAAAATCCAAATCCAATTCCATTAGATGAAGAAATTGAAAAAACAAGCTCTAAGTTGATTGATTTGGAAATAGATGTGAAGATTATNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNAAAGTTGATGGCGGCGTTGAAAGAATTGGATCTTGAAGTGAATCATGCTAGTGTGTCTGTAGTGAATGATTTGATGATTCAACAAGCTTCGGTTAACATGGGAAGTCGATTTTACACTAAGGAACAGCTTTCATCTGCTCTTTCTTCCAAAATTGGTGATGCACAATGA 504 0.3155 EKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELKSKLQGLESSKGELEKQLDTTKKELELASKNPNPIPLDEEIEKTSSKLIDLEIDVKIXXXXXXXXXXXXXXXXXXXKLMAALKELDLEVNHASVSVVNDLMIQQASVNMGSRFYTKEQLSSALSSKIGDAQ 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme150865g00001 167 SMART finulus 1 42 IPR011598 GO:0046983
Trme150865g00001 167 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 36 IPR011598 GO:0046983
Trme150865g00001 167 Pfam Helix-loop-helix DNA-binding domain 2 36 IPR011598 GO:0046983
Trme150865g00001 167 PANTHER MYC 1 162 IPR045084 GO:0003700|GO:0006355
Trme150865g00001 167 Gene3D - 1 62 IPR036638 GO:0046983
Trme150865g00001 167 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 57 IPR036638 GO:0046983
Trme150865g00001 167 Coils Coil 33 67 - -
Trme150865g00001 167 Coils Coil 163 167 - -
Trme150865g00001 167 Coils Coil 93 93 - -
Trme150865g00001 167 Coils Coil 113 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme150865g00001 Trme-Chr150865 3 506 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme150865g00001 1 166 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G17880 57.831 4.65e-53 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trme150865g00001 HLH 3.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme150865g00001 K13422 - gmx:100790854 218.009