Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme15056g00001 TGTTCTTTCAAAGAACAATTGCAACAACATGTTCGCGTCCATGCAATGGAAGCAGTCATGGCTTGTTGGGAGATAGAGCAATCCTTACAAAGTCTAACAGGAGTTTCACCTGGAGAAGGTACGGGGGCAACAATGTCCGAAGACGAAGATGAACAAGTAGACAGTGATGCCAATATATTTGATGGTAGTTTCGATGGCGGCGCAGATAACATGGGATTTGGTCCTCTTGTACCAACAGAGAATGAAAGATCCCTAATGGAGCGCGAGGAAGATAAGGCAAGGTTGGTGCAAGAAACTGGTTTGCAATTAAAGCAGATTAATAACTGGTTTATCAATCAAAGGAAGAGGAATTGGCACAGCAATCCTTCAACTTCAACTGTCTTGAAGAGCAAGCGCAAAAGGGAGCCTTAG 411 0.438 CSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSEDEDEQVDSDANIFDGSFDGGADNMGFGPLVPTENERSLMEREEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKRKREP 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme15056g00001 136 CDD homeodomain 89 121 IPR001356 GO:0003677
Trme15056g00001 136 SMART KNOX2_2 1 34 IPR005541 GO:0003677|GO:0005634
Trme15056g00001 136 Gene3D - 4 123 - -
Trme15056g00001 136 ProSiteProfiles 'Homeobox' domain profile. 89 120 IPR001356 GO:0003677
Trme15056g00001 136 Pfam KNOX2 domain 1 33 IPR005541 GO:0003677|GO:0005634
Trme15056g00001 136 MobiDBLite consensus disorder prediction 33 88 - -
Trme15056g00001 136 MobiDBLite consensus disorder prediction 114 136 - -
Trme15056g00001 136 Pfam Homeobox KN domain 89 116 IPR008422 GO:0003677|GO:0006355
Trme15056g00001 136 SUPERFAMILY Homeodomain-like 89 122 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme15056g00001 Trme-Chr15056 1 1457 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme15056g00001 89 133 Homeobox Transcription Factor Family AT5G11060 91.111 1.93e-22 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme15056g00001 - - cpap:110807039 176.407