Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme150501g00001 ACTTCATGTGGGCACAATTTTTGCCTGAAGTGTTTTGAGAAATGGATTCAACAAGGAAAACGAACTTGCGCGAATTGTAGGGCTGCAATTCCAGCAAAGATGGCGAGTAATCCAAGAATCAATGCACAGTTGGCAATTGGGATTCGTATGGCCAAACTAGCTAGATCGGAGAATGTTGGAGGAAGCACTGCTACAAAGGTTTATCATGTTGTTCACAATGATGAGCGTCCTGACACTTGTTTCAGGACAGAGAGAGCAAAGAAAACTGGGAAGGCTAATGCTTGCAGTGGAAAAATCTTTGTGACAATTCCAAAAGATCATTTTGGACC 329 0.4255 TSCGHNFCLKCFEKWIQQGKRTCANCRAAIPAKMASNPRINAQLAIGIRMAKLARSENVGGSTATKVYHVVHNDERPDTCFRTERAKKTGKANACSGKIFVTIPKDHFGP 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme150501g00001 110 Pfam Zinc finger, C3HC4 type (RING finger) 2 26 IPR018957 GO:0046872
Trme150501g00001 110 ProSiteProfiles Zinc finger RING-type profile. 3 27 IPR001841 -
Trme150501g00001 110 SUPERFAMILY RING/U-box 1 36 - -
Trme150501g00001 110 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 77 IPR013083 -
Trme150501g00001 110 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 1 110 IPR045134 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme150501g00001 Trme-Chr150501 217 545 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme150501g00001 1 110 C2H2 Transcription Factor Family AT5G39550 59.459 8.24e-39 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme150501g00001 K10638 - gmx:100781044 179.489