Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1503g00001 ATGAAAGCAGAAGCTGCAAAGGCTGATGTTTTTTATTTAATCTCGGGCGCATGGAAATCATCGGTAGAACGCCTTTTTCTTTGGATCGGAGGATACCGTCCATCGCAACTTCTAAATATCATTGTACCGAAGCTTGATGCTTTAACTGATGCACAAATTGTTAGCATTAACAACCTCTGTTTCTCCACTCTGCAATCTGAAGATGCTCTATCACAAGGGTTAGAAAAACTCCAGCAAATAATGATAAAAAACATTCAAGCCGATCCTTTGGATTTTCGATACTATGGCTTTCACATGGCTGCTGCCATTGACAAAGGAGAAGTAGTCGAAAGTTTTGTAAACCAGGCCGATCACCTTAGGCACCAAATTTTGTTGTACATGTCTCGCATCCTGACAGTTGGGCAGGCTGCTCAAGGCTTGTTGGCTATGGGGGAATACTTTCAACGCCTTCGCGCTCTTAGTTCTTTGTGGAGTACTGCACGTTCATCTACTCAACACTCAAGGAAACGTTTGTTTGAAATTGAATATGGAAATTGGGTTGAAGAGCAAGATCGACAAAATGAAGAACTAAGAAACGCATTGCAATCGAATGCATCTAATACACAGATTCATCAACTTGTTGAGAGTAGCTTGAACCAATACTCAAATCTTTTCAAAATGAACGCAGAAGCGGCAAAGACTGATGTCTTTTATTTAATCTCTGGCGCATGGAAAACATCAGTAGAATCCCTTTTTCATTGGATTGGAGGATCCCTTCCATCACAACTTCTAAATATCATTGTACCAAAGATTGATGCTTTAACTGATCAACAAATTGTTAGCATCCACAACCTTCGTCTATCCTGTCAGCAAGCTGAAGATGCTCTATCAATAGGGTTAGAAAAACTCCAACAGAGTATGATCAACAACATTCAAGCTGATCCCTTGGATTTTGGAAACAGTGGCTTTCAGATGGTTGCTGCCATGGACAAATTAGAAGCAGTAGAATGTTTTATAATCGAG 1002 0.4022 MKAEAAKADVFYLISGAWKSSVERLFLWIGGYRPSQLLNIIVPKLDALTDAQIVSINNLCFSTLQSEDALSQGLEKLQQIMIKNIQADPLDFRYYGFHMAAAIDKGEVVESFVNQADHLRHQILLYMSRILTVGQAAQGLLAMGEYFQRLRALSSLWSTARSSTQHSRKRLFEIEYGNWVEEQDRQNEELRNALQSNASNTQIHQLVESSLNQYSNLFKMNAEAAKTDVFYLISGAWKTSVESLFHWIGGSLPSQLLNIIVPKIDALTDQQIVSIHNLRLSCQQAEDALSIGLEKLQQSMINNIQADPLDFGNSGFQMVAAMDKLEAVECFIIE 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1503g00001 334 ProSiteProfiles DOG1 domain profile. 1 160 IPR025422 GO:0006351|GO:0043565
Trme1503g00001 334 ProSiteProfiles DOG1 domain profile. 169 334 IPR025422 GO:0006351|GO:0043565
Trme1503g00001 334 Pfam Seed dormancy control 188 261 IPR025422 GO:0006351|GO:0043565
Trme1503g00001 334 Pfam Seed dormancy control 1 42 IPR025422 GO:0006351|GO:0043565
Trme1503g00001 334 Coils Coil 180 200 - -
Trme1503g00001 334 PANTHER TRANSCRIPTION FACTOR TGA9 1 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1503g00001 Trme-Chr1503 126 2546 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1503g00001 172 332 Calmodulin-binding Proteins AT1G77920 52.469 1.60e-52 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1503g00001 K14431 - mtr:112421960 471.085