Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme15023g00001 ATGGTGAAGTGTGATTGGATATACGAAGTGGTAAACACCACTGAAACTCACATTGCAAGGTCCTGGGTGAAGGTGTCCAACATAGCAATATCGGCATTGCCAATTGAGCTAGACCTTACGAACTCTGGTTTGATCTCAAGTTCAGCTGGGAATGGTTTCACCCCGCATGTGATCAATGTCGCAATTGGAGAGGACATTGCGACAAAAATTCTGGCATTTTCTCAGCAGGGACCTAGAGCTATATTTGTTATGTCAGCCACTGGCGCTGTCTCTACTGTGACGCTTTGTCAAGCTTCGACATCTGGGGGATCTGTCACATATGAG 324 0.463 MVKCDWIYEVVNTTETHIARSWVKVSNIAISALPIELDLTNSGLISSSAGNGFTPHVINVAIGEDIATKILAFSQQGPRAIFVMSATGAVSTVTLCQASTSGGSVTYE 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme15023g00001 108 ProSiteProfiles PPC domain profile profile. 50 108 IPR005175 -
Trme15023g00001 108 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 41 108 IPR039605 GO:0003680
Trme15023g00001 108 CDD DUF296 54 108 IPR005175 -
Trme15023g00001 108 Gene3D - 55 108 - -
Trme15023g00001 108 SUPERFAMILY AF0104/ALDC/Ptd012-like 51 102 - -
Trme15023g00001 108 Pfam Plants and Prokaryotes Conserved (PCC) domain 55 95 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme15023g00001 Trme-Chr15023 31 961 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme15023g00001 44 108 AT-hook Motif Nuclear Localized (AHL) Family AT2G45850 67.692 9.96e-24 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme15023g00001 - - pxb:103938660 106.301