Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme15019g00001 ATGATGTTTGAAAATATCATTGAAGCTACTGAGAATTTTGATGACAAATATCTCATTGGAGTTGGAAGTCAAGGAAACGTTTACAAGGCAGAGTTGTCTGCAGGTACGGTTGTGGCTGTGAAGAAGCTTCATTTAGTAACAGATGAAGAAATGTCAACTTTCAGTTCGAAGTCTTTTAAGAGTGAGATTGAAACCTTAGCAGAAATCAAACACAGGAACATCATTAAACTTATTGGATTTTGCTCACATTCTAAGTTCTCATTTTTGGTTTACAACTTCTTGGAAGGTGGAAGCTTAGATCATATACTAAACAATGACACACATGCCACTGCATTTGATTGGGAAAAGAGGGTGAATGTTGTTAAAGGTGTGGCCAATGCTTTGTCCTACTTGCATCATGATTGCTCACCTCCTATTATTCACCGCGATATATCAAGCAAGAATGTCCTTCTTAATCTTGACTATGAAGCTCATGTCTCCGACTTCGGGATAGCAAAGTTTCTAAAGCCTGGTTTACTTAGTTGGACCCAATTTGCCGGCACTTTTGGTTATGCAGCACCAGAGTTGGCACAAACAATGGAAGTGAATGAGAAATGTGATGTATACAGCTTTGGAGTACTTGCNNTNNNNNNNNNNATGGGAAAACATCCGGGAGATCTTATTTCATTATTTTTGTCACCATCTACAAGGCTGATGGCTAATGATATGTTGCTGATGGATGTTTTAGATCAACGACCTCAACAAGTTATGAAACCAATTGATGAAGAGGTTATCTTGATTACAAAGTTGGCATTTGCTTGCTTGAGTCAAAATCCACGTTCTCGTCCAACCATGGAACAAGTATCTAAGATGCTTGCAGCAGGAAAATCACCTTTGGAGACTCAACTTCGCATGATCAGACTAGGACAACTTCAATAA 918 0.3834 MMFENIIEATENFDDKYLIGVGSQGNVYKAELSAGTVVAVKKLHLVTDEEMSTFSSKSFKSEIETLAEIKHRNIIKLIGFCSHSKFSFLVYNFLEGGSLDHILNNDTHATAFDWEKRVNVVKGVANALSYLHHDCSPPIIHRDISSKNVLLNLDYEAHVSDFGIAKFLKPGLLSWTQFAGTFGYAAPELAQTMEVNEKCDVYSFGVLAXXXXMGKHPGDLISLFLSPSTRLMANDMLLMDVLDQRPQQVMKPIDEEVILITKLAFACLSQNPRSRPTMEQVSKMLAAGKSPLETQLRMIRLGQLQ 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme15019g00001 305 PANTHER LEUCINE RICH REPEAT KINASE 2 1 290 - -
Trme15019g00001 305 FunFam Leucine-rich repeat receptor protein kinase MSP1 1 93 - -
Trme15019g00001 305 ProSiteProfiles Protein kinase domain profile. 13 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme15019g00001 305 PIRSF ILK 5 297 - -
Trme15019g00001 305 Pfam Protein kinase domain 15 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme15019g00001 305 SUPERFAMILY Protein kinase-like (PK-like) 4 285 IPR011009 -
Trme15019g00001 305 Gene3D Transferase(Phosphotransferase) domain 1 94 298 - -
Trme15019g00001 305 Gene3D Phosphorylase Kinase; domain 1 1 93 - -
Trme15019g00001 305 ProSitePatterns Tyrosine protein kinases specific active-site signature. 139 151 IPR008266 GO:0004672|GO:0006468
Trme15019g00001 305 FunFam MDIS1-interacting receptor like kinase 2 94 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme15019g00001 Trme-Chr15019 355 1381 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme15019g00001 3 187 Receptor kinase-like Gene Family AT4G08850 57.527 1.33e-66 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trme15019g00001 Pkinase 9.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme15019g00001 - - lja:Lj0g3v0284579.1 441.81