Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme150117g00001 ATGGCAGGAACAAGTGAGAAAGTTGCAATAGGAATCGACCTAGGAACAACATATTCTTGTGTTGCTGTGTGGAGGAATGATCAATTAGAGATCATAGTGAACGACCAAGGGAACAGAATAACACCTTCTTATGTTGCCTTCACTNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTCAACAAGGCTGCTTACAACCCAACCAACACTGTCTTCG 214 0.3645 MAGTSEKVAIGIDLGTTYSCVAVWRNDQLEIIVNDQGNRITPSYVAFTXXXXXXXXXXXNKAAYNPTNTVF 71
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme150117g00001 71 FunFam heat shock 70 kDa protein-like 3 71 - -
Trme150117g00001 71 PRINTS 70kDa heat shock protein signature 8 21 - -
Trme150117g00001 71 PRINTS 70kDa heat shock protein signature 36 48 - -
Trme150117g00001 71 PRINTS 70kDa heat shock protein signature 58 66 - -
Trme150117g00001 71 SUPERFAMILY Actin-like ATPase domain 7 70 IPR043129 -
Trme150117g00001 71 Pfam Hsp70 protein 9 71 IPR013126 GO:0005524|GO:0140662
Trme150117g00001 71 Gene3D - 2 71 - -
Trme150117g00001 71 PANTHER HEAT SHOCK PROTEIN 70KDA 9 71 IPR013126 GO:0005524|GO:0140662
Trme150117g00001 71 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme150117g00001 Trme-Chr150117 261 474 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme150117g00001 1 71 Calmodulin-binding Proteins AT3G12580 64.789 4.63e-26 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme150117g00001 K03283 - psom:113328745 98.2117