Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme150015g00001 ATGAATTTAAAGCCTTCCAATCTACTTCTTGATGCAAATGGTCATGCTGTGGTTTCTGATTATGGACTTGCTACAATTCTGAAGAAGCCTTCCTGTTGGAAGGCTCGACCTGAGTGTGACTCCACAAAGATCCATTCCTGTATGGAATGTATAATGCTTAGCCCACATTATACAGCACCAGAGGCTTGGGAACCTGTGAAGAAGTCATTAAATTTGTTCTGGGATGATGGAATAGGTATATCTCCCGAATCAGATGCCTGGAGTTTTGGTTGTACATTGGTGGAGATGTGCACGGGTGCCATTCCTTGGGCTGGTTTAAGTGCAGAGGAAATCTATCGAGCAGTTGTCAAGGCAAAGAAGCAGCCTCCACAATATGCTAGTGTGGTTGGTGGAGGAATTCCAAGGGAACTGTGGAAGATGATTGGAGAGTGCTTACAATTCAAACCATCTA 451 0.4412 MNLKPSNLLLDANGHAVVSDYGLATILKKPSCWKARPECDSTKIHSCMECIMLSPHYTAPEAWEPVKKSLNLFWDDGIGISPESDAWSFGCTLVEMCTGAIPWAGLSAEEIYRAVVKAKKQPPQYASVVGGGIPRELWKMIGECLQFKPS 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme150015g00001 150 SUPERFAMILY Protein kinase-like (PK-like) 2 149 IPR011009 -
Trme150015g00001 150 Gene3D Transferase(Phosphotransferase) domain 1 1 150 - -
Trme150015g00001 150 ProSiteProfiles Protein kinase domain profile. 1 150 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme150015g00001 150 Pfam Protein kinase domain 3 149 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme150015g00001 150 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG 1 150 IPR044584 GO:0004842|GO:0006952|GO:0009738|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme150015g00001 Trme-Chr150015 1 546 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme150015g00001 2 106 MAP Kinase Kinase Kinase AT4G08500 37.143 1.12e-11 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-1 Trme150015g00001 Pkinase 6.8e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme150015g00001 K16279 - gmx:100782956 313.923