Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme150013g00001 CTAGACATTAATGATGTTCAGTTGATTATCCAGTGTGAGCCTCCCCGGGATGTAGAAGCATATATACATCGATCTGGGCGGACAGGAAGAGCTGGCAACACTGGAGTTGCTGTGATGCTTTATGATCCCAGAAGGTCGAATATAGCTAAAATAGAAAGAGAAGCTGGTATAAAATTTGAACGTGTATCTGCTCCTCAGCCTGATGAAATTGCCAAAGCTATGGGTGGGGATGCTGCTGAAATGATTACTGAAGTGTCTGATAG 263 0.4373 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRRSNIAKIEREAGIKFERVSAPQPDEIAKAMGGDAAEMITEVSD 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme150013g00001 87 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 68 IPR027417 -
Trme150013g00001 87 Gene3D - 1 86 IPR027417 -
Trme150013g00001 87 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 1 70 - -
Trme150013g00001 87 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 70 IPR001650 -
Trme150013g00001 87 Pfam Helicase conserved C-terminal domain 1 32 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme150013g00001 Trme-Chr150013 106 546 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme150013g00001 1 70 Eukaryotic Initiation Factors Gene Family AT3G19760 37.143 5.77e-07 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme150013g00001 K16911 - psat:127137105 162.155