Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme149872g00001 GAGCTCTTGATTGATTTCTATACAAGTTCTGGGAACCGAAAACCCGACAACATTATCATTTTCAGGGATGGTGTCAGTGAGTCCCAGTTTAACCAAGTGTTGAACATTGAACTGAGCCAAGTCATTGAGGTTCTTAAATTGTTCAAATTTTCTTTTAATATATGA 165 0.3636 ELLIDFYTSSGNRKPDNIIIFRDGVSESQFNQVLNIELSQVIEVLKLFKFSFNI 54
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme149872g00001 54 ProSiteProfiles Piwi domain profile. 1 54 IPR003165 GO:0003676
Trme149872g00001 54 SUPERFAMILY Ribonuclease H-like 3 50 IPR012337 -
Trme149872g00001 54 Gene3D - 1 54 IPR036397 GO:0003676
Trme149872g00001 54 Pfam Piwi domain 1 49 IPR003165 GO:0003676
Trme149872g00001 54 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 2 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme149872g00001 Trme-Chr149872 182 527 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme149872g00001 1 41 Eukaryotic Initiation Factors Gene Family AT1G48410 58.537 1.16e-07 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme149872g00001 K11593 - gmx:100792105 86.6557