Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme149800g00001 ACCACGCTGCTTGCGAGTTGGGGACGCGGGACTTCCCTGGCTGCAAATGCAATGTCAATTCTCAGCTCTCTCCGATCATCAAAACTCATCACCTGGAAACCCACCGGAAAGCTTCAACAAACCCTAACAAGATGTGTGGAACGGAAAGGAATCTCTTTGCATTCTGGAAAAGTTTCGAAGGTGAAATTGTGTCCTGGATTTGCAGGTCAAGGAAGGTACTTCGATTTTCGGTCGAATCAAATTCCTGCTTCGGTTGAATTTGCTCAGGTTTCGCCTCTTTGTACTACTTTGTGTAAAGATGGGTTGAGGATTCGGACTGTGGAGCATTTGCTTTCGGCGTTGGAGGCTGTTGGTGTTGATAATTGTAGGATTGAGATTGAGAATTTGGATGATCAAGGTGATGAAGCTGAG 411 0.4599 TTLLASWGRGTSLAANAMSILSSLRSSKLITWKPTGKLQQTLTRCVERKGISLHSGKVSKVKLCPGFAGQGRYFDFRSNQIPASVEFAQVSPLCTTLCKDGLRIRTVEHLLSALEAVGVDNCRIEIENLDDQGDEAE 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme149800g00001 137 Coils Coil 119 137 - -
Trme149800g00001 137 Gene3D lpxc deacetylase, domain 1 37 135 IPR015870 GO:0008759|GO:0009245
Trme149800g00001 137 PANTHER UDP-3-O-ACYL-N-ACETYLGLUCOSAMINE DEACETYLASE 1, MITOCHONDRIAL-RELATED 21 130 IPR004463 GO:0008759|GO:0009245
Trme149800g00001 137 SUPERFAMILY Ribosomal protein S5 domain 2-like 38 128 IPR020568 -
Trme149800g00001 137 Pfam UDP-3-O-acyl N-acetylglycosamine deacetylase 39 128 IPR004463 GO:0008759|GO:0009245
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme149800g00001 21 137 Carbohydrate Esterase AT1G24793 64.957 1.80e-45 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme149800g00001 K02535 - gmx:100814465 176.022