Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme14950g00001 GAAATCCTTGATGTTAATAAATTGATGGAGCAAGAAAAGGTTTGTGAGTATGCTGAAGACGTTGGTGGAAAAACTGATTTTTTGGATGACGAAACAGAGGCTCCAGATGACAAGTGTGAATATGAGTTGGGAGTGGCTCCTGACGAAGAATTGGTTCATCTTTCAAAGAAATTAGACACCTCAGCAGAAGAGAAGTTAGATGCAGTTGACCATGATAAAAAATGTGAAGCAATGCTTCCTAAAAAGGTCAGTAATAAAACTGAAAAACAGAAGCTACCTTCACTGTTAGACTCAACCTCAAAGTTAAAAGTAAAGCATCAAGCTACAAAACGTCCTGCAAGTAAAACCAAGAAGACCACAGTTGCAAAGAAATTAGCGAAATCTGAAGAGGCAGCAGTATCTGGGGAGAAGATTCCTAATGAGACAAAGGATGAGGCAGAAATAAAAATCCTGAAAGAAATGTCTGTACATTCTGATATAAGTGAGAACTCAAATGTACCAAGAAATAAGCCAGATAATTTTGTTGAAGAGGAGAAGGAGAATAGACCAAATGATAGAGAACATGGTTTAGTGGATAGAACAAGTGTTGGAAATCAAACTACTAAATCTAGTGTTAAGCCAGCAAATATCATCAAATCTAAGAAAATGAAGCACAATTCATCTATATCTGAATTTAAAGCAAGAGCAAAAACTGAAGCCACATGTTTTATATTAAGTGGGCATCGCTTCCAGAGAAAGGAGTATCAACAAGTAATCAAGCGTTTGAAAGGAAGGGTTTGCCGTGATTCTCATCAGTGGTCATATCAGGCAACACACTTCATAGCCCCAGACCCTATAAGGAGGACAGAGAAATTTTTTGCTGCTAGTGCATCAGGAAGGTGGATTCTTAAAACTGATTTCTTAACTGCCAGTAGTCAGGCAGGAAAATTATTGCCCGAGGAGCCTTATGAGTGGCACAAAAATGGTCTCAGCGAGGATGGTGCCATCAATATGGAGGCTCCAAGAAAGTGGCGGCTGTTGAAAGAAAGAACAGGTCATGGTGCCTTCTATGGGATGCGTATTGTTGATACTCTGAAGCGTGCAGTCAAAGCTGGAGATGGAACAATATTAGCAACGTCCCCTCCTTATACCCGCTTCCTTGATAGTGGAGTTGACTATGCCTTAGTTAGCCCTGGC 1176 0.4014 EILDVNKLMEQEKVCEYAEDVGGKTDFLDDETEAPDDKCEYELGVAPDEELVHLSKKLDTSAEEKLDAVDHDKKCEAMLPKKVSNKTEKQKLPSLLDSTSKLKVKHQATKRPASKTKKTTVAKKLAKSEEAAVSGEKIPNETKDEAEIKILKEMSVHSDISENSNVPRNKPDNFVEEEKENRPNDREHGLVDRTSVGNQTTKSSVKPANIIKSKKMKHNSSISEFKARAKTEATCFILSGHRFQRKEYQQVIKRLKGRVCRDSHQWSYQATHFIAPDPIRRTEKFFAASASGRWILKTDFLTASSQAGKLLPEEPYEWHKNGLSEDGAINMEAPRKWRLLKERTGHGAFYGMRIVDTLKRAVKAGDGTILATSPPYTRFLDSGVDYALVSPG 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme14950g00001 392 MobiDBLite consensus disorder prediction 105 121 - -
Trme14950g00001 392 Gene3D BRCT domain 227 344 IPR036420 -
Trme14950g00001 392 MobiDBLite consensus disorder prediction 81 144 - -
Trme14950g00001 392 Pfam BRCA1 C Terminus (BRCT) domain 238 303 IPR001357 -
Trme14950g00001 392 SUPERFAMILY BRCT domain 235 322 IPR036420 -
Trme14950g00001 392 MobiDBLite consensus disorder prediction 122 144 - -
Trme14950g00001 392 ProSiteProfiles BRCT domain profile. 233 318 IPR001357 -
Trme14950g00001 392 MobiDBLite consensus disorder prediction 158 192 - -
Trme14950g00001 392 MobiDBLite consensus disorder prediction 171 192 - -
Trme14950g00001 392 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 61 392 IPR044254 -
Trme14950g00001 392 CDD BRCT_TopBP1_rpt7 235 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme14950g00001 Trme-Chr14950 3 1507 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme14950g00001 232 392 Core DNA Replication Machinery Family AT4G02110 70.760 4.84e-82 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme14950g00001 K10728 - gmx:100799144 485.723