Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme14942g00001 ATGAGGATGAATGGCACAACAAAGTCCTCATTAGCTAATCATGTAAATGAAACTGTTGCTGGAGCTGTAACAATAAGGGCTTTTGAGGAGGAAGATCGTTCTTTTAATAAGAACCTTGATCTAATTGATATTAATGCTAGTGCTTTTTTCCATAGTTTTGCCTCAAATGAGTGGTTAATCCAACGGTTAGAAACAATCAGTGCAGTTGTTCTTACCGCGGCAGCACTTTGCATAGTTATGTTCCCCCCCGGAACTTTCACCTCAGAAAGTGAGGCCGAAGAAATAGTAGAAGGAAATCGTCCTCCTCAGAATTGGCCAGTTGCAGGCAAAGTAGAAATAAATGACTTGAAGATTCGATACAGACCCGATGGACCACTAGTACTTAATGGGATCACATGCACATTTAAAGAAGGGCACAAGATTGGTATTGTTGGAAGAACAGGCAGTGGGAAATCCACTCTAATAAGCGCTTTATTTCGTCTTGTGGAACCAGCAGGAGGAAAAATTATAGTTGATGGACTAGATATATCATCTATTGGCCTTCATGATTTGAGGCTACGTTTTGGGATTATACCTCAGGATCCTACCCTCTTTAATGGGACTGTAAAATATAATTTGGACCCTTTATCTCAACACACTGATCAAGAGATATGGGAGGTTCTTGGGAAGTGTCAGTTGCGAGAAGTTGTTCAAGGGAAAGAAGATGGTTTAAACTCCTCAGTTTGTGAAGATGGGTCAAATTGGAGCATGGGACAAAGACAATTGTTTTGTTTGGCACGTGCTCTTTTGAGGAAAAGTAGGATATTGGTGTTAGACGAAGCAACTGCATCAATTGATAATTCTACTGATCTGATTATGCAGAAAACCATTAGAACTGAGTTTGCAGATTGTACAGTGATCACAGTAGCACACAGGATACCAACTGTGATGGATTGCAG 938 0.4041 MRMNGTTKSSLANHVNETVAGAVTIRAFEEEDRSFNKNLDLIDINASAFFHSFASNEWLIQRLETISAVVLTAAALCIVMFPPGTFTSESEAEEIVEGNRPPQNWPVAGKVEINDLKIRYRPDGPLVLNGITCTFKEGHKIGIVGRTGSGKSTLISALFRLVEPAGGKIIVDGLDISSIGLHDLRLRFGIIPQDPTLFNGTVKYNLDPLSQHTDQEIWEVLGKCQLREVVQGKEDGLNSSVCEDGSNWSMGQRQLFCLARALLRKSRILVLDEATASIDNSTDLIMQKTIRTEFADCTVITVAHRIPTVMDC 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme14942g00001 312 Gene3D - 94 312 IPR027417 -
Trme14942g00001 312 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 101 312 IPR027417 -
Trme14942g00001 312 Pfam ABC transporter 128 276 IPR003439 GO:0005524
Trme14942g00001 312 SUPERFAMILY ABC transporter transmembrane region 4 80 IPR036640 GO:0005524|GO:0016020
Trme14942g00001 312 Gene3D ABC transporter type 1, transmembrane domain 1 89 IPR036640 GO:0005524|GO:0016020
Trme14942g00001 312 CDD ABCC_MRP_domain2 109 312 - -
Trme14942g00001 312 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 111 312 IPR003439 GO:0005524
Trme14942g00001 312 FunFam Multidrug resistance-associated protein member 4 95 312 - -
Trme14942g00001 312 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 2 82 - -
Trme14942g00001 312 SMART AAA_5 137 311 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme14942g00001 Trme-Chr14942 1 1467 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme14942g00001 102 312 Calmodulin-binding Proteins AT2G36910 31.651 5.59e-30 118