LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trme149314g00001	GCTTTCTCGATCGACAACCGTCAGATCGTGTCTGCATCTCGTGACCGCACGATTAAGCTGTGGAACACTCTCGGTGAATGCAAATACACCATTCAAGACGGTGATGCTCATTCCGATTGGGTTAGCTGTGTGAGATTCAGCCCTAGCACTCTTCAGCCAACAATCGTCTCTGCTTCNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNGTGAACACTGTTGCTGTTTCACCTGATGGTTCTCTTTGCGCTTCTGGTGGCAAAGATGGTGTTATTCTTCTGTGGGATTTGGCTGAGGGAAAGAGACTTTATTCTCTTGATGCTGGTTCTATTATTCATGCTTTGTGTTTCAGTCCTAATAGGTACTGGCTATGTGCTGCAACTGAGTCCAGCATCAAGATCTGGGATTTGGAGAGCAAGAGCATTGTCGAGGATTTGAAGATTGACCTTAAGAGCGAAGCTGATGCTAACTCTGGTGGTGGTACCACAACTACCAAGAAGAAGGT	548	0.4015	AFSIDNRQIVSASRDRTIKLWNTLGECKYTIQDGDAHSDWVSCVRFSPSTLQPTIVSASXXXXXXXXXXXXXXXXXXXXXXXXXVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGSIIHALCFSPNRYWLCAATESSIKIWDLESKSIVEDLKIDLKSEADANSGGGTTTTKKKV	183

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trme149314g00001	183	PRINTS	G protein beta WD-40 repeat signature	9	23	IPR020472	-
	Trme149314g00001	183	PRINTS	G protein beta WD-40 repeat signature	97	111	IPR020472	-
	Trme149314g00001	183	PRINTS	G protein beta WD-40 repeat signature	137	151	IPR020472	-
	Trme149314g00001	183	ProSiteProfiles	Trp-Asp (WD) repeats circular profile.	78	115	-	-
	Trme149314g00001	183	PANTHER	RECEPTOR FOR ACTIVATED PROTEIN KINASE C RACK1	1	169	IPR045223	GO:0043022\|GO:0045182
	Trme149314g00001	183	ProSiteProfiles	Trp-Asp (WD) repeats profile.	85	119	IPR001680	GO:0005515
	Trme149314g00001	183	Gene3D	-	1	183	IPR015943	GO:0005515
	Trme149314g00001	183	ProSiteProfiles	Trp-Asp (WD) repeats circular profile.	1	22	-	-
	Trme149314g00001	183	Pfam	WD domain, G-beta repeat	123	150	IPR001680	GO:0005515
	Trme149314g00001	183	Pfam	WD domain, G-beta repeat	85	110	IPR001680	GO:0005515
	Trme149314g00001	183	Pfam	WD domain, G-beta repeat	2	22	IPR001680	GO:0005515
	Trme149314g00001	183	ProSitePatterns	Trp-Asp (WD) repeats signature.	97	111	IPR019775	-
	Trme149314g00001	183	SMART	WD40_4	24	68	IPR001680	GO:0005515
	Trme149314g00001	183	SMART	WD40_4	113	150	IPR001680	GO:0005515
	Trme149314g00001	183	SMART	WD40_4	71	110	IPR001680	GO:0005515
	Trme149314g00001	183	ProSiteProfiles	Trp-Asp (WD) repeats profile.	1	22	IPR001680	GO:0005515
	Trme149314g00001	183	FunFam	Receptor for activated C kinase 1	1	180	-	-
	Trme149314g00001	183	SUPERFAMILY	WD40 repeat-like	1	162	IPR036322	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trme149314g00001	Trme-Chr149314	1	548	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trme149314g00001	2	172	U-box Gene Family	AT2G33340	27.528	8.50e-10	55.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trme149314g00001	K14753		-	gmx:100778205	281.952