Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme149275g00001 ATGCATGAGTCACGCCATCTCCATGCATTGCGGAGACCAAGAGGATGCGGTGGTCGCTTCTTGAACACAAAGAAATCCGCCAGCGGAGATGATAAAGCGGGAAGTAAAGTGCATAAATTTGGCGGTCAACAATTGCAGTGCAGCGGCTCTCAGAGTTCCGAACTCCTTGAATCTGATGTTGGAACTTTAAACTCCTCAAAAGAAACTAATGGAAGCAGTCCGAATATTTCTGGGTCCGAGGTGACTAGTTTGTATTCAAGAGGAAATCTTGACGGCTTCAACATCAATAATCTTGGATCTAATGTCCACTCGTTGGCAAACATGATC 327 0.4526 MHESRHLHALRRPRGCGGRFLNTKKSASGDDKAGSKVHKFGGQQLQCSGSQSSELLESDVGTLNSSKETNGSSPNISGSEVTSLYSRGNLDGFNINNLGSNVHSLANMI 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme149275g00001 109 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 1 83 IPR001289 GO:0003700|GO:0006355
Trme149275g00001 109 MobiDBLite consensus disorder prediction 41 80 - -
Trme149275g00001 109 ProSiteProfiles NF-YA/HAP2 family profile. 1 23 IPR001289 GO:0003700|GO:0006355
Trme149275g00001 109 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 1 20 IPR001289 GO:0003700|GO:0006355
Trme149275g00001 109 Gene3D - 1 24 - -
Trme149275g00001 109 MobiDBLite consensus disorder prediction 1 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme149275g00001 Trme-Chr149275 1 327 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme149275g00001 1 84 CCAAT-HAP2 Transcription Factor Family AT5G06510 50.000 5.76e-17 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Trme149275g00001 CBFB_NFYA 4.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme149275g00001 K08064 - gmx:100527677 163.31