Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme149239g00001 ATGAATGCGGTCACTGGAATAGTCCTTCAAAATTGCTCAATCATGCCAGATAATGAGCTTTACCCTACTAGATTGACAGTGAAGACTTACTTGGCAAGACCATGGAAGCCATATTCAAGGGCAGTATTTATCGACAATTTTATGGGTGATTTGATTCAACCGGATGGATATTCGATTTGGCGTCCTAATGCAACACACATTGCAAACTGCTACTTTGCAGAATTTGGTAGCACTGGACCAGGTGCCAATTCTCAAGCAAGGGTTAAATGGAGTAAAGGTCTTATTAGTAAGGATGAAGCTACTAAATTCACTGCTCAACCGTGGCTCCAAGCTAACACTTGGTTGTCTGCCACTGGCATTCCTTTCAGTCCTGGCCTTGAAGCTTAA 387 0.4264 MNAVTGIVLQNCSIMPDNELYPTRLTVKTYLARPWKPYSRAVFIDNFMGDLIQPDGYSIWRPNATHIANCYFAEFGSTGPGANSQARVKWSKGLISKDEATKFTAQPWLQANTWLSATGIPFSPGLEA 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme149239g00001 128 Pfam Pectinesterase 2 111 IPR000070 GO:0030599|GO:0042545
Trme149239g00001 128 SUPERFAMILY Pectin lyase-like 5 125 IPR011050 -
Trme149239g00001 128 PANTHER PECTINESTERASE 4 116 - -
Trme149239g00001 128 Gene3D - 1 126 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme149239g00001 Trme-Chr149239 44 430 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme149239g00001 6 126 Carbohydrate Esterase AT2G47030 46.281 2.44e-32 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme149239g00001 K01051 - gmx:100808559 175.252