Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme14914g00001 GCATCTAGTCCATTGCAAGTGAAGTATGCAGATGGCGAGTTGGAAAGATTAGAACACAAACTCTTCATTGGCATGCTTCCAAAGAACGTTTCTGAAGTTGAAGTATCTGCACTTTTCTCCAAGTATGGAACTATAAAGGATTTACAAATTTTAAGAGGTTCTCAGCAGACAAGTAAAGGTTGTGCATTTTTGAAGTATGAAACCAAAGAACAAGCTCTTGCTGCTTTGGAGGCAATCAATGGAAAGCACAAAATGGAGGTGCGTGTTTATTAA 273 0.3846 ASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEVSALFSKYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEVRVY 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme14914g00001 90 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 83 IPR000504 GO:0003723
Trme14914g00001 90 Gene3D - 16 89 IPR012677 -
Trme14914g00001 90 PANTHER RNA BINDING PROTEIN 9 83 - -
Trme14914g00001 90 SUPERFAMILY RNA-binding domain, RBD 15 83 IPR035979 GO:0003676
Trme14914g00001 90 SMART rrm1_1 20 88 IPR000504 GO:0003723
Trme14914g00001 90 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 90 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme14914g00001 Trme-Chr14914 768 1285 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme14914g00001 5 82 Eukaryotic Initiation Factors Gene Family AT1G71770 29.268 3.23e-08 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme14914g00001 K13207 - gmx:100776362 169.474