Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme148977g00001 ATCAATGACCGCACTGAGCAACATTCAGGTTTTGAGCAACATTCCTTCAAGAGGGCAAGAATGATTGGTAACAATCGTTCCGATGTATTGCCGTGCCCTCCTCCTAGGGTAGGGAACTGGGATGATGATCAAAAAATCATCCACAAGATGAAGCTGTGTAAGAAGTTTTACAATGGTGAGCAATGTCCTTATGGTGAGAAGTGTAGTTTTCTTCATGAAGATCCTGCTAAGTTTAGGGCTGATTCTTGGAAATCAAGAGAATGTTCTGCAATAAGCATTGGGACTGTTGGTTCCCCAAAGTCTTTTGGGGATGGTTCTGATAACTTGGAAGGCAATAGTGGTG 343 0.4286 INDRTEQHSGFEQHSFKRARMIGNNRSDVLPCPPPRVGNWDDDQKIIHKMKLCKKFYNGEQCPYGEKCSFLHEDPAKFRADSWKSRECSAISIGTVGSPKSFGDGSDNLEGNSG 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme148977g00001 114 Gene3D - 44 76 - -
Trme148977g00001 114 SUPERFAMILY CCCH zinc finger 47 74 IPR036855 GO:0046872
Trme148977g00001 114 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Trme148977g00001 114 Pfam CCCH-type zinc finger 51 72 IPR041367 -
Trme148977g00001 114 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Trme148977g00001 114 FunFam Zinc finger CCCH domain-containing protein 39 44 76 - -
Trme148977g00001 114 MobiDBLite consensus disorder prediction 94 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme148977g00001 Trme-Chr148977 2 548 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trme148977g00001 zf-CCCH_4 2.1e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme148977g00001 - - tpra:123881739 173.711